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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G277000.2.p | ||||||||
Common Name | LOC100814800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YC | ||||||||
Protein Properties | Length: 263aa MW: 29148.1 Da PI: 4.2906 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 39 | 1.7e-12 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +P l+ska elf+ +l r++ + +t++ ++++v+ ++fdfl div + Glyma.02G277000.2.p 1 MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSK 69 899***************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.1E-18 | 1 | 68 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.8E-11 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.48E-19 | 1 | 71 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MQADEDVGKI AMAVPLLVSK ALELFLQDLC DRTYDITLRR GAKTMNAFHL KQCVQTFNVF 60 DFLKDIVSKV PDLGGSVATG DDHAVTKRRK VAGDDDNDSD EELKRNKKPE PGHSSGRGRG 120 RGRGRGLGGG IRTVDQEMSS HAKCEDDSDV LKQNDNHTQS NESMENVLEP EEVKQSFPVS 180 ELAEVSVRNF DLNLDPDENM DSLDTPTSVP TSSSAKSVSE EKHEEYPGWS LSEMEKMIID 240 PIQLANLNGR IDEDEEDYDE EM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-14 | 1 | 55 | 21 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 125 | RGRGRGRGRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G277000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518474.1 | 0.0 | dr1-associated corepressor | ||||
Refseq | XP_028219364.1 | 0.0 | dr1-associated corepressor-like | ||||
TrEMBL | A0A368UIJ8 | 0.0 | A0A368UIJ8_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445LV15 | 0.0 | A0A445LV15_GLYSO; Dr1-associated corepressor | ||||
TrEMBL | I1JIU1 | 0.0 | I1JIU1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G44500.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 2e-50 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G277000.2.p |
Entrez Gene | 100814800 |