PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G236400.1.p
Common NameGLYMA_02G236400, LOC100782543
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 719aa    MW: 80089.8 Da    PI: 6.9284
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G236400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.3e-18317416198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kvl+ sd+++ grlvlpk++ae++   +++ e+  l+++d +g+ W++++++  +++s++yvl+ G     +a +L++gD+v+F++++
  Glyma.02G236400.1.p 317 FEKVLSASDAGRIGRLVLPKSCAEAYfpPISQSEGLPLQFKDVKGNDWTFQFRFwpNNNSRMYVLE-GVTPCMQAMQLNAGDTVMFSRID 405
                          99**************************555556677***************9989999999***9.********************887 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            ++++v++ +r
  Glyma.02G236400.1.p 406 -PGGKFVMGSRR 416
                          .66666777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-29314424IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-19314412IPR015300DNA-binding pseudobarrel domain
CDDcd100177.36E-22315416No hitNo description
PfamPF023627.9E-16317416IPR003340B3 DNA binding domain
PROSITE profilePS5086310.348317418IPR003340B3 DNA binding domain
SMARTSM010194.7E-19317417IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MEVEVCMNVS CKNGYAREWK KGWPLRSGGF ARLCHKCGSA YENLIFCQKF HLHQTGWREC  60
SFCNKTLHCG CIASSSMFEY LDYGGIGCVT CVKTSQLNLI RDTENTIGSV RSIKNNASDR  120
HTEHMDSRLL VDGAGKGNLM QLRRHVEASE SSRWQRAERD GIDSCIGPNR QDDRRFSNVM  180
KLSGHSLTFT TLDNNRPTWE TQTMHKSSSQ NMSLGTSSGN SVLPSALDIA ERRLEGKTSF  240
CPFHQGQRLF SISKPLMDGI AINLEASKGV ISQERVARPP ANGKTKNLLL SRYWPRITDQ  300
ELEKLSGDLK STIVPLFEKV LSASDAGRIG RLVLPKSCAE AYFPPISQSE GLPLQFKDVK  360
GNDWTFQFRF WPNNNSRMYV LEGVTPCMQA MQLNAGDTVM FSRIDPGGKF VMGSRRASDS  420
IDTQEASTFS HSNDFATKEA TFSGATANLH SGNSYPDLLR TTKGNGEPYL NRYSEHLRFS  480
TETANCLQTE NDMELRVTWE EAQDLLHPPP CVKPSVETIE DKEFEEFEEP PVFGKGTTIN  540
DHPSGSLSSA SEEMSSRELE NILVTSKDTK KRRIMEKPES IQEHESVGLD DHIDPTDSSA  600
GATTKHPRHR SGCTCIVCIQ PPSGKGRHRP TCTCLACMTV RRRFKTLMMR KKQRESDATQ  660
KDQIHHSDEG DTNGGASRDG AIASNLENEG SLNRMDELGA GQIDLNSHPD HEDMQVAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-672954242131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1640651RRRFKTLMMRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G236400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518346.10.0B3 domain-containing transcription repressor VAL1
RefseqXP_028190736.10.0B3 domain-containing transcription repressor VAL1-like
TrEMBLA0A0R0L0850.0A0A0R0L085_SOYBN; Uncharacterized protein
TrEMBLA0A445LTG40.0A0A445LTG4_GLYSO; B3 domain-containing transcription repressor VAL1
STRINGGLYMA14G38492.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15634911
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-169high-level expression of sugar-inducible gene 2