PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G121100.1.p
Common NameGLYMA_02G121100, LOC100819079
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family YABBY
Protein Properties Length: 174aa    MW: 18908.4 Da    PI: 9.6084
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G121100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY153.42.1e-47101562163
                YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 
                          d++  se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l  ++ +  s +  +++h           +l    + + sn +k ++
  Glyma.02G121100.1.p  10 DLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPSSQSQSVDH-----------TLS--LQGFYSNAKKGQA 86 
                          77899**************************************977666666655555555...........222..2333333333222 PP

                YABBY  92 astsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                          +s+s ss   +++++  +p++   v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa f
  Glyma.02G121100.1.p  87 SSSS-SSP--TTSNESVSPKAASfVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARF 156
                          2222.222..234455666666669**********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-5614156IPR006780YABBY protein
SuperFamilySSF470956.41E-9100154IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.4E-5109155IPR009071High mobility group box domain
CDDcd013905.55E-6117153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MNHEDKLTMD LVPPSEHLCY VRCNFCNTVL AVGIPCKRLL DTVTVKCGHC SNLSFLSTRP  60
PSSQSQSVDH TLSLQGFYSN AKKGQASSSS SSPTTSNESV SPKAASFVVK PPEKKHRLPS  120
AYNRFMKEEI QRIKAANPEI PHREAFSAAA KNWARFIPNS PTSSVSATKV NAD*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected during flower and leaf development. Expression in the flower meristem in the early stage of flower development. When carpel primordia begin to form, specific and uniform expression in carpel primordia. Expression in the central region of the leaf plastochron 1 (P1) primordia. Detected up to P4 stage, hardly detected in the P5 leaves. {ECO:0000269|PubMed:14729915}.
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G121100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0119241e-176KR011924.1 Thermopsis turcica CRABS CLAW mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520126.11e-126protein CRABS CLAW
RefseqXP_028203712.11e-126protein CRABS CLAW-like
SwissprotQ76EJ07e-67YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A445LMU81e-124A0A445LMU8_GLYSO; Protein DROOPING LEAF
TrEMBLK7K7W11e-124K7K7W1_SOYBN; Uncharacterized protein
STRINGGLYMA02G13350.21e-125(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Representative plantOGRP90691114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-66YABBY family protein