PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G082000.1.p

Common Name

GLYMA_02G082000

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 600aa MW: 68007.4 Da PI: 5.6242

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G082000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.1	9.7e-28	69	152	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r +m+ +r+++lk+plWeevs+k++e g++rs+k+Ckek+en+ k+ k++ke++++++ + +++fdql+ Glyma.02G082000.1.p 69 RWPRQETLALLKIRLDMDAVFRDSSLKGPLWEEVSRKLAELGYQRSAKKCKEKFENVYKYNKRTKENKSGKSH--GKAYKFFDQLQ 152 8***************************************************************9999754..456****98 PP
2	trihelix	99.1	3.7e-31	417	502	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev++Li++r+++e +++++ k+plWe++s++m++ g++rs+k+Ckekwen+nk++kk++e++k+r e+s+tcpyf++lea Glyma.02G082000.1.p 417 RWPKAEVHDLIRLRTSLEIKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKKVRESSKER-REDSKTCPYFHELEA 502 8*******************************************************************8.78999******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.702	62	126	IPR017877	Myb-like domain
SMART	SM00717	1.2	66	128	IPR001005	SANT/Myb domain
Pfam	PF13837	5.0E-18	68	154	No hit	No description
CDD	cd12203	3.25E-24	68	133	No hit	No description
PROSITE profile	PS50090	6.806	410	474	IPR017877	Myb-like domain
SMART	SM00717	1.7	414	476	IPR001005	SANT/Myb domain
Pfam	PF13837	1.8E-20	416	503	No hit	No description
CDD	cd12203	1.29E-25	417	481	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence Send to blast
MQLGDSSVLE ISSHTEPEMA VVSPPEEAPH EGGHNSGGGG GSDEMIGMDL DANSGEGNEG 60 NKMSFGGNRW PRQETLALLK IRLDMDAVFR DSSLKGPLWE EVSRKLAELG YQRSAKKCKE 120 KFENVYKYNK RTKENKSGKS HGKAYKFFDQ LQALENQFTV SYPPKPQPTS TLTTTNTLTS 180 DHGNKVISYV TPFPSTNPTL IPPSPQTNTN TTTTTTTTST TDPRDSSPPQ TNNNNNSVPH 240 SLPNMNAPFL TTTTSTSSST ASDEDLEERY RRKRKWKDYF RRLTRKVLLK QEEMQKKFLE 300 AMDQRERERV AQQDNWRMQE MARINREHEI LVQERSTASA KDAAVIALLQ KMYGQQNPTQ 360 HVEVEPPQQQ KQTMPQSQPP ILMPNNNFEV KKMNNGHSAT STTTTTTSPV SSSSSSRWPK 420 AEVHDLIRLR TSLEIKYQEN GPKAPLWEDI SIAMQRLGYN RSAKRCKEKW ENINKYFKKV 480 RESSKERRED SKTCPYFHEL EALYKEKGKS QNPFGMFQNM TPNETMMMEP LMVQPEQQWR 540 PPPQSLEEGI GKDNASEEYN QEKEEEVEEN GGDDDDNIEE DGDSVEDAGP NPCEIATNN*

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence Send to blast

MQLGDSSVLE ISSHTEPEMA VVSPPEEAPH EGGHNSGGGG GSDEMIGMDL DANSGEGNEG  60
NKMSFGGNRW PRQETLALLK IRLDMDAVFR DSSLKGPLWE EVSRKLAELG YQRSAKKCKE  120
KFENVYKYNK RTKENKSGKS HGKAYKFFDQ LQALENQFTV SYPPKPQPTS TLTTTNTLTS  180
DHGNKVISYV TPFPSTNPTL IPPSPQTNTN TTTTTTTTST TDPRDSSPPQ TNNNNNSVPH  240
SLPNMNAPFL TTTTSTSSST ASDEDLEERY RRKRKWKDYF RRLTRKVLLK QEEMQKKFLE  300
AMDQRERERV AQQDNWRMQE MARINREHEI LVQERSTASA KDAAVIALLQ KMYGQQNPTQ  360
HVEVEPPQQQ KQTMPQSQPP ILMPNNNFEV KKMNNGHSAT STTTTTTSPV SSSSSSRWPK  420
AEVHDLIRLR TSLEIKYQEN GPKAPLWEDI SIAMQRLGYN RSAKRCKEKW ENINKYFKKV  480
RESSKERRED SKTCPYFHEL EALYKEKGKS QNPFGMFQNM TPNETMMMEP LMVQPEQQWR  540
PPPQSLEEGI GKDNASEEYN QEKEEEVEEN GGDDDDNIEE DGDSVEDAGP NPCEIATNN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.23662	0.0	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G082000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025980789.1	0.0	trihelix transcription factor GT-2-like
TrEMBL	I1JDE9	0.0	I1JDE9_SOYBN; Uncharacterized protein
STRING	GLYMA02G09050.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181
Representative plant	OGRP663	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	4e-72	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Glyma.02G082000.1.p