PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G236300.1.p
Common NameGLYMA_01G236300, LOC100804447
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 775aa    MW: 84483.5 Da    PI: 6.425
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G236300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR512.9e-16485522340
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  Glyma.01G236300.1.p 485 CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 522
                          89**********************************96 PP
2TCR50.63.9e-16569607139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Glyma.01G236300.1.p 569 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 607
                          589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.3E-18483524IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.11484609IPR005172CRC domain
PfamPF036381.1E-11486521IPR005172CRC domain
SMARTSM011144.4E-17569610IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-11571607IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MDTPERNQIT STLSKFEDSP VFNYINSLSP IKPVKSVPIS QTFNSLSFSS PPSVFTSPHV  60
SCLKESRFLR RHNPLGTSKP KVPSEDVIKV HSSEETLADS THAHHNSSKL EEENTGKGIS  120
VRDASIELSR EHIKFSDELP QALKYNCGSP GFDPPPCGDE ANSLLELPGE AATDVGYVQE  180
GCKTDSVEVE VHLQEVCQME PKSEGPDCYW DSLIPDALDM LIFNSPGDAE AFKGLMHKPL  240
ASSIRLNEFM SMLPHSTINN GRKMHIVDSD ASGSAPEIED HCSELMTATG TNQTQDNFAN  300
VALVTSNSNE KANDQLVSAT HRTIRRRCLD FEMANVQRKN SDENSNTGSS TSESDERNVA  360
NEKQLLPAKR NGDLQRGILQ GIGLHLNALA ALKEYKGIQI EKLSSGRQLS LPSSTSLQIS  420
TSQEHQNLSL VPVSSERELD PSDNGVQPAE DCSQPSAYMA GEDFNQNSPK KKRRKSETPG  480
ETEGCKRCNC KKSKCLKLYC ECFAAGVYCI EPCSCQDCFN KPIHEDTVLQ TRKQIESRNP  540
LAFAPKVIRN SDSVPEIGDD PNKTPASARH KRGCNCKKSS CLKKYCECYQ GGVGCSISCR  600
CEGCKNAFGR KDGSASVGIE TDPEETEATD KGVTEKALQK TEIQNTEDHP DSATVATPLR  660
LSRPLLPLPF SSKGKPPRSF VTTISGSALF ASQKLGKPNP LWSQAKHFQT VPDEEIPDIL  720
QGDSSPITCI KTSSPNGKRI SSPNCDLGSS PSRRGGRRLI LQSIPSFPSL TPHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1748860614120Protein lin-54 homolog
5fd3_B3e-1748860614120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469473KKKRR
2469474KKKRRK
3470474KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.419380.0cotyledon| hypocotyl| seed coat| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G236300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517569.10.0protein tesmin/TSO1-like CXC 2
TrEMBLI1JAR50.0I1JAR5_SOYBN; Uncharacterized protein
STRINGGLYMA01G44670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-135TESMIN/TSO1-like CXC 2