PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G196600.1.p
Common NameGLYMA_01G196600, LOC100784129
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 284aa    MW: 31863.2 Da    PI: 8.3237
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G196600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18138192256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Glyma.01G196600.1.p 138 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARRLNLRPRQVEVWFQNRRARTK 192
                          788899***********************************************98 PP
2HD-ZIP_I/II123.41.1e-39138227191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++lk+en+rL+ke +eL+ +
  Glyma.01G196600.1.p 138 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLKDENRRLKKELQELK-A 226
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Glyma.01G196600.1.p 227 L 227
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-18129195IPR009057Homeodomain-like
PROSITE profilePS5007117.54134194IPR001356Homeobox domain
SMARTSM003892.6E-15136198IPR001356Homeobox domain
CDDcd000861.26E-16138195No hitNo description
PfamPF000466.1E-16138192IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-17138192IPR009057Homeodomain-like
PROSITE patternPS000270169192IPR017970Homeobox, conserved site
PfamPF021837.4E-10194228IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.4E-23194237IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGLDQDANSS GLHLVLGLSL TATVKETTQS TKPDDDHHLC VIKPTPTKPY PPNEPSLTLG  60
LSGESYHVTK QVLRNNVYCE DPLELSRQTS PHSVVSSFST GRVVKRERDL SCEDIEVEAE  120
ERVSSRVSDE DEDGTNARKK LRLTKEQSAL LEESFKQHST LNPKQKQALA RRLNLRPRQV  180
EVWFQNRRAR TKLKQTEVDC EFLKKCCETL KDENRRLKKE LQELKALKLA QPLYMPMPAA  240
TLTMCPSCDR LGGVNDNGSN KSPFSMAPKP HFYNPFANPS AAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186194RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.151840.0leaf| meristem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G196600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0992290.0BT099229.1 Soybean clone JCVI-FLGm-13J3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517364.10.0homeobox-leucine zipper protein HAT22
RefseqXP_028244902.10.0homeobox-leucine zipper protein HAT22-like
SwissprotP466043e-96HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A445M5D20.0A0A445M5D2_GLYSO; Homeobox-leucine zipper protein HAT22
TrEMBLI1J9H40.0I1J9H4_SOYBN; Uncharacterized protein
STRINGGLYMA01G40450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-78HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]