PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G133000.1.p
Common NameGLYMA_01G133000, LOC100789085
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 909aa    MW: 101007 Da    PI: 6.8195
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G133000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.6e-18322421198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++
  Glyma.01G133000.1.p 322 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD 410
                          89**************************555567778***************9989999999***9.********************876 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++l +++++
  Glyma.01G133000.1.p 411 -PEGKLIMGFRK 421
                          .77777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-29314430IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.15E-18319422IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-21320421No hitNo description
SMARTSM010191.2E-19322422IPR003340B3 DNA binding domain
PfamPF023621.6E-15322421IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166322423IPR003340B3 DNA binding domain
PROSITE profilePS5105013.161587637IPR011124Zinc finger, CW-type
PfamPF074961.2E-8592634IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MESRSCMNVA CATSTTIRWR KGWALRSGEF ADLCDKCGSA YEQSTYCDMF HSNDSGWREC  60
TSCDKRLHCG CIASMSQLEL LDTGGVSCIS CGRNSGPQPI ASNEKPNGSG TSKVQNVSTQ  120
QQCTSLANQL TVRGMQVGHY AENDELQCWF KTHNVETDGP FAEMKPEILP SVGELGNTLI  180
SQFHCESNGS SKASKAENCK PETEMRDIYE SLAQTNLSMT LAAPLGNSNP FHSAVVDERE  240
QSKTSPLLLG SRSHHLLPKP ARSTIGTSLE ANAGMVSQIR VARPPAEGRG RNQLLPRYWP  300
RITDQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR  360
IQDVKGKEWM FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLIMGFR  420
KATNSTAVQE TLPSNMPNGS HSSETSYSGV YVNLPILSGY SGLLQLQKGC SETHLNALSK  480
KWNSAGGDMS WHNIDMPESR KRDELPLPPV MVPEKKRTRN IGSKSKRLLI DSQDALELKL  540
TWEEAQDMLR PPPTVKPSIV MIEDHVFEEY EEPPVFGKRS IFVVRSTGVN EQWTQCDSCS  600
KWRKLPVDVL TPPKWTCVEN LWDQSRCSCA APNELNPREL DNLLRLNKEF KKQRLAASQR  660
LALEHESSGL DALANAAILG DDASDSGRTS VVSTTKHPRH RPGCSCIVCI QPPSGKGKHK  720
PTCTCNVCMT VKRRFKTLMM RKKKRQSERE AEIAQRNQLS WRTKDESEVD STLRHLTPVD  780
RLENEVRVQN ELDSRSQNHA VAEAAKGQLD LNCQPDREDV QAWPNNLSMT SLLEEANLPL  840
ETYLKRNGLS SLISEQQTNS ASNVQAQTTN DSEGKHNEDC GTALVIHERE SSPEENSGQD  900
REQNNSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-693004292131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1731742KRRFKTLMMRKK
2731744KRRFKTLMMRKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.403580.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G133000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014630512.10.0B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A445M2G60.0A0A445M2G6_GLYSO; B3 domain-containing transcription repressor VAL2 isoform B
TrEMBLK7K3M00.0K7K3M0_SOYBN; Uncharacterized protein
STRINGGLYMA01G32810.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]