PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca006219G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 206aa    MW: 22902.3 Da    PI: 8.3641
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca006219G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA49.91e-15172206136
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 
                      +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rk
  Gh_Sca006219G01 172 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRK 206
                      69***************************9.88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.4E-4170206IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115221.339171206IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.8E-11173206IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860176196IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MQQKPYVTNQ PEPNANNNKP YTIGSQPWWC NTRQDSMVTD VLGRNMTSLS LAEHPSECLG  60
AKISESLSDG THKICSTKEL PFTVLSLPDG KCIVEQPQLQ HAIPIIPPSM GEYVAAPTQM  120
ELVGHSIACP SYPYADPYHR GAMSPYGPQS LVHSHCLGVN PARMALPLEM AEEPVYVNAK  180
QYHGILRRRQ SRAKAELEKK LIKVRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016742667.11e-153PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_016742668.11e-153PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
TrEMBLA0A1U8NUM61e-151A0A1U8NUM6_GOSHI; nuclear transcription factor Y subunit A-1-like isoform X1
TrEMBLA0A2P5X3R41e-151A0A2P5X3R4_GOSBA; Uncharacterized protein
STRINGEOY093121e-102(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156021015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.32e-30nuclear factor Y, subunit A1