PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0627
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 460aa    MW: 50714.5 Da    PI: 7.2776
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0627genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.61.6e-054880335
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                 e++C+ +  +++  +C++++  lC +C    H+
  Gh_D13G0627 48 EPVCDFCRGERAVVYCKSDSARLCLSCDGCVHS 80
                 789************************998885 PP
2CCT58.81.9e-20404447144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R++a+ RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ 
  Gh_D13G0627 404 RDKAKIRYNEKKKTRIFGKQIRYASRKARADTRKRVKGRFVKAG 447
                  888999***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.7E-94693IPR000315B-box-type zinc finger
CDDcd000213.92E-54993No hitNo description
PROSITE profilePS501199.1155079IPR000315B-box-type zinc finger
PfamPF062036.0E-16404446IPR010402CCT domain
PROSITE profilePS5101714.426404446IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MSESKLLKYE NQVENLRVVF VRIEESIEPN YRPTAVVYCK VRGNNGMEPV CDFCRGERAV  60
VYCKSDSARL CLSCDGCVHS ANLLSCRHVR SLLCEKCNSQ SAVVRCLDEK LSLCQDCDGN  120
GNGCWSLGHW REALNSYTDC PSLAEFRRIW SSVLGASSPA VFDVDWPVGA STANDNCFTN  180
CLNQIDQGGS FELAGTKLNE LGSCPKLKPC MISSSLISPN ANYIPYCKDG EPVFSEEPNM  240
PKGFSDLRDF KVPDGDDLCE GLNINDVQFS FKTANEIFGG SQGQTRYQFE KVGTDGPIMD  300
KTLPALPSGQ KECLPFPSSQ VGCSASMMAT MIGTSNCMLM NPSCNRNINL GYPVGQVPSN  360
LAPSPSNITV KNSPADFQDC GLPPAFLTGD SHFQNLEASC PQARDKAKIR YNEKKKTRIF  420
GKQIRYASRK ARADTRKRVK GRFVKAGEEY DYDPLVARNF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5780782e-45JX578078.1 Gossypium hirsutum clone NBRI_GE10025 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703838.10.0PREDICTED: putative zinc finger protein CONSTANS-LIKE 11
TrEMBLA0A1U8KS720.0A0A1U8KS72_GOSHI; putative zinc finger protein CONSTANS-LIKE 11
STRINGGorai.013G071300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-86B-box type zinc finger protein with CCT domain