PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D12G1484

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 390aa MW: 44878.4 Da PI: 7.0765

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D12G1484	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.5	3.3e-27	71	152	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk k+++++ s +++y++++e Gh_D12G1484 71 WVQDETRSLIAFRREMDGLFNTSKSNKHLWEQISAKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEIE 152 ******************************************************************84...556899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-4	61	132	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.409	63	127	IPR017877	Myb-like domain
SMART	SM00717	1.4E-4	67	129	IPR001005	SANT/Myb domain
CDD	cd12203	2.74E-29	69	134	No hit	No description
Pfam	PF13837	7.9E-21	70	154	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MYLSEKPRSI DLYKEEGPAT ARDMIIDVTT NGDLPPHHHH HPPPHQQQII LGESSCEDPE 60 VKAPKKRAET WVQDETRSLI AFRREMDGLF NTSKSNKHLW EQISAKMRDK GFDRSPTMCT 120 DKWRNLLKEF KKAKHQDRGS GSAKMSYYKE IEEILRERTK NAYKSPTPPP KVDSYMHFAD 180 KGFEDAGMSF GPVEASGRPI LNLERRLDHE GHPLAIAAAD AVADSGVPPW NWRETPGNGV 240 DCQAYGGRVI TVKFGEYSRR IGIDGSADAI REAIKSAFRL RTKRAFLLED EDHIVRSLDR 300 EMPLGNYXLN VPYYLFIFKF LHSGLPIKVC LYDESDHIPV HTEEKIFYVE DDYREYLLRR 360 GYTGLREING YRNIDNLDDL RTNAIYRGVS

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MYLSEKPRSI DLYKEEGPAT ARDMIIDVTT NGDLPPHHHH HPPPHQQQII LGESSCEDPE  60
VKAPKKRAET WVQDETRSLI AFRREMDGLF NTSKSNKHLW EQISAKMRDK GFDRSPTMCT  120
DKWRNLLKEF KKAKHQDRGS GSAKMSYYKE IEEILRERTK NAYKSPTPPP KVDSYMHFAD  180
KGFEDAGMSF GPVEASGRPI LNLERRLDHE GHPLAIAAAD AVADSGVPPW NWRETPGNGV  240
DCQAYGGRVI TVKFGEYSRR IGIDGSADAI REAIKSAFRL RTKRAFLLED EDHIVRSLDR  300
EMPLGNYXLN VPYYLFIFKF LHSGLPIKVC LYDESDHIPV HTEEKIFYVE DDYREYLLRR  360
GYTGLREING YRNIDNLDDL RTNAIYRGVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	8e-52	65	150	1	86	DNA binding protein GT-1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.307	0.0	boll\| ovule\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KU896413	8e-38	KU896413.1 Hibiscus cannabinus microsatellite HC_ES_37_CTC sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438311.1	0.0	PREDICTED: trihelix transcription factor GT-1-like isoform X1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A0D2T736	0.0	A0A0D2T736_GOSRA; Uncharacterized protein
STRING	Gorai.008G163200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]