PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D11G1034

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ARF

Protein Properties

Length: 736aa MW: 82455.6 Da PI: 7.7988

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D11G1034	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68.2	1.2e-21	129	230	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt sd++++g +++ +k+a+e+ ++ ++ +++l+ +d++g +W++k+i+ ++++r++lt+GW+ Fv +++L +gD +vF + +++e Gh_D11G1034 129 FSKILTASDTSTHGGFSVLRKHATEClppldmNLATP-TQELVAKDLHGYEWRFKHIFrGRQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGDNGE 223 889*************************9744444.459************97778888*********************..348999 PP .EEEEE- CS B3 92 lvvkvfr 98 l+v+v+r Gh_D11G1034 224 LRVGVRR 230 9**98 PP
2	Auxin_resp	105.6	5.7e-35	256	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++t++ F v+Y+Pr+ s+F++ v+k+++a+++ +svGmRfkm+fe+eds+err++Gt+vgv d++p +W++SkWrsLk Gh_D11G1034 256 AAHAVTTHTLFVVYYKPRT--SQFIIGVNKYLEAINNGFSVGMRFKMRFEGEDSPERRFTGTIVGVGDISP-HWSESKWRSLK 335 79**************6..9*******************************************99.*******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.16E-38	114	259	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.9E-38	121	245	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.40E-19	127	230	No hit	No description
SMART	SM01019	3.8E-21	129	232	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.21	129	232	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-19	129	230	IPR003340	B3 DNA binding domain
Pfam	PF06507	3.3E-32	256	335	IPR010525	Auxin response factor
Pfam	PF02309	1.8E-6	558	618	IPR033389	AUX/IAA domain
SuperFamily	SSF54277	7.19E-12	573	658	No hit	No description
PROSITE profile	PS51745	24.264	582	674	IPR000270	PB1 domain
Pfam	PF02309	4.6E-6	623	670	IPR033389	AUX/IAA domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence Send to blast
MAHLEGNQRG SSTAHAVSGS AGDDLYQELW KLCAGPLVEV PRVHERVFYF PQGHMEQLEA 60 STNQELSNQT PLFNLPSKIL CRVLHVELLA EQETDEVYAQ ITLQPEDQSE PTSLDPFPTE 120 APKRTVHSFS KILTASDTST HGGFSVLRKH ATECLPPLDM NLATPTQELV AKDLHGYEWR 180 FKHIFRGRQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD NGELRVGVRR LARQQSTMPS 240 SVISSQSMHL GVLATAAHAV TTHTLFVVYY KPRTSQFIIG VNKYLEAINN GFSVGMRFKM 300 RFEGEDSPER RFTGTIVGVG DISPHWSESK WRSLKIQWDE PAAIQRPERV SPWEIEPFVA 360 SASTNAQPTI MCKRPRPVDI PASEITTSSA GSAFWCRESI QSHELTPVGS TLEVQSSENQ 420 VMWPMRQKEA DNCLINGNGG YKSRTPPENA WPPSPLVNVS LNLFPDSMEN NYKTGALQTA 480 LTGYAKGLMH DQVEKRKTET FTGCRLFGFN LTDSASVAAP PDKEQTSTSI GYNGVRGHVP 540 AAFHVEQKPE TSKEQKQVAS ETSTQEMQAK QGSATSMRSR TKENFTVHMQ GIAVGRAIDL 600 TALKGYNDLI NELEKMFEIK GELCRSGQWS IVFTDDEGDM MLVGDDPWVE FCKMVRKIFI 660 YSSEEVKKIS TRCKFPASSM ECEGTVVSLD SEHRKRKWQE LKLGILIPKF HGIIASFRRR 720 KMVRGKLSFQ EFGSLV

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence Send to blast

MAHLEGNQRG SSTAHAVSGS AGDDLYQELW KLCAGPLVEV PRVHERVFYF PQGHMEQLEA  60
STNQELSNQT PLFNLPSKIL CRVLHVELLA EQETDEVYAQ ITLQPEDQSE PTSLDPFPTE  120
APKRTVHSFS KILTASDTST HGGFSVLRKH ATECLPPLDM NLATPTQELV AKDLHGYEWR  180
FKHIFRGRQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGD NGELRVGVRR LARQQSTMPS  240
SVISSQSMHL GVLATAAHAV TTHTLFVVYY KPRTSQFIIG VNKYLEAINN GFSVGMRFKM  300
RFEGEDSPER RFTGTIVGVG DISPHWSESK WRSLKIQWDE PAAIQRPERV SPWEIEPFVA  360
SASTNAQPTI MCKRPRPVDI PASEITTSSA GSAFWCRESI QSHELTPVGS TLEVQSSENQ  420
VMWPMRQKEA DNCLINGNGG YKSRTPPENA WPPSPLVNVS LNLFPDSMEN NYKTGALQTA  480
LTGYAKGLMH DQVEKRKTET FTGCRLFGFN LTDSASVAAP PDKEQTSTSI GYNGVRGHVP  540
AAFHVEQKPE TSKEQKQVAS ETSTQEMQAK QGSATSMRSR TKENFTVHMQ GIAVGRAIDL  600
TALKGYNDLI NELEKMFEIK GELCRSGQWS IVFTDDEGDM MLVGDDPWVE FCKMVRKIFI  660
YSSEEVKKIS TRCKFPASSM ECEGTVVSLD SEHRKRKWQE LKLGILIPKF HGIIASFRRR  720
KMVRGKLSFQ EFGSLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldv_A	1e-167	19	358	13	355	Auxin response factor 1
4ldw_A	1e-167	19	358	13	355	Auxin response factor 1
4ldw_B	1e-167	19	358	13	355	Auxin response factor 1
4ldx_A	1e-166	19	358	13	355	Auxin response factor 1
4ldx_B	1e-166	19	358	13	355	Auxin response factor 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	376	KRPRP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.19012	1e-91	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269\|PubMed:12036261}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ567000	1e-38	AJ567000.1 Gossypium hirsutum microsatellite DNA mGhCIR051, clone CIR051.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016710167.1	0.0	PREDICTED: auxin response factor 18-like isoform X2
Swissprot	Q9C5W9	0.0	ARFR_ARATH; Auxin response factor 18
TrEMBL	A0A0D2SBB3	0.0	A0A0D2SBB3_GOSRA; Auxin response factor
STRING	Gorai.007G109500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2764	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61830.1	0.0	auxin response factor 18

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Wójcikowska B,Gaj MD Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787]