PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D10G0445

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 350aa MW: 39414.3 Da PI: 8.9957

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D10G0445	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.6	4.9e-16	23	118	2	86
trihelix 2 WtkqevlaLiearr.emeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 Wt +e+++Liea++ + e+r++r+ k + +W++v ++++ +g+ rs++qC++kw+nl ++ykk++e ++k ++++ s+ + + ++e Gh_D10G0445 23 WTVNETMVLIEAKEmDYERRMKRSgdhsegrnKPTELRWKWVEDYCWGKGCLRSQNQCNDKWDNLMRDYKKVREYQRKVaeREGNDSKQRSYWEME 118 ***********963333333322222222268899************************************999843355666777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.876	15	88	IPR017877	Myb-like domain
Pfam	PF13837	2.3E-12	22	118	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MHLMMDDQGG NNAVTREYRK GNWTVNETMV LIEAKEMDYE RRMKRSGDHS EGRNKPTELR 60 WKWVEDYCWG KGCLRSQNQC NDKWDNLMRD YKKVREYQRK VAEREGNDSK QRSYWEMEKN 120 ERKEKNLPSN MLRQIYDRLE EVVEKKGAQT VAATAGGGGG SDPNITNLPY VMDRPMVSTF 180 QPSLPPLLQH QLSAPIPAAI PLPLPQASPQ LPPPPAPIIQ PPPLSYAQPL PTIGSSDSDT 240 SEHSDSPAKR RRRGGGNGEG TSGTANNINE VSTAISRSAS IIAEAIQASE EREERRHRDL 300 LSFHERRLKI EESKTEINKK GMDGLVDAIN KLANSIFALA SHKNQSSAPK

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MHLMMDDQGG NNAVTREYRK GNWTVNETMV LIEAKEMDYE RRMKRSGDHS EGRNKPTELR  60
WKWVEDYCWG KGCLRSQNQC NDKWDNLMRD YKKVREYQRK VAEREGNDSK QRSYWEMEKN  120
ERKEKNLPSN MLRQIYDRLE EVVEKKGAQT VAATAGGGGG SDPNITNLPY VMDRPMVSTF  180
QPSLPPLLQH QLSAPIPAAI PLPLPQASPQ LPPPPAPIIQ PPPLSYAQPL PTIGSSDSDT  240
SEHSDSPAKR RRRGGGNGEG TSGTANNINE VSTAISRSAS IIAEAIQASE EREERRHRDL  300
LSFHERRLKI EESKTEINKK GMDGLVDAIN KLANSIFALA SHKNQSSAPK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2547	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012457270.1	0.0	PREDICTED: protein enabled homolog isoform X1
Refseq	XP_012457271.1	0.0	PREDICTED: protein enabled homolog isoform X1
Refseq	XP_012457272.1	0.0	PREDICTED: protein enabled homolog isoform X1
TrEMBL	A0A0D2RH28	0.0	A0A0D2RH28_GOSRA; Uncharacterized protein
STRING	Gorai.011G050400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-62	Trihelix family protein