PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G0796
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 357aa    MW: 41704.1 Da    PI: 4.8768
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G0796genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.61.2e-16148234286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                  Wt+ e+ +L++a  ++  + +r++l++  W+ev++k++e  ++er+ +qC+++++ l+k+ykk+k++  +  ts+s s+++yf++++
  Gh_D09G0796 148 WTEGETFVLLDAWGDRFLQRKRKSLRAEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKAMVAETgTSTSNSKWVYFKKMD 234
                  *************************************762678***********************9888779*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-4110118IPR009057Homeodomain-like
PfamPF138371.2E-22147236No hitNo description
PROSITE profilePS500906.121148205IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-4173212IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDEIEDVRYH SNLYGDNQQQ GYRSSSSGKL PVRDVSCSRL NGNRYVDGNE DEEEDDEDLS  60
EEDENHCKIN GDQYVRNYDD GYDNKLYDDD EGSNQKNDDV DSRRHPKKRK LKDLVSSYEF  120
VRRVPAPEVA STSVPKPSCG GRNPLTDWTE GETFVLLDAW GDRFLQRKRK SLRAEEWQEV  180
AEKVSEVSKI ERTDTQCRNR LDTLKKKYKK EKAMVAETGT STSNSKWVYF KKMDMLMSSS  240
PQQGVIHKAI SGEMRDSPTI SESTDSEEDV SEGLPPKKRR LERQRDDDSW FKLLADSIWK  300
FSNVYEKIEN SKRVQMLELE NMRMEFHREL EMQKRQILKK LQAEIVKMQE EDNASSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170QRKRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016672054.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1U8I8F30.0A0A1U8I8F3_GOSHI; trihelix transcription factor ASIL2-like
STRINGGorai.006G098600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2495234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-45Trihelix family protein