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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Gh_D08G1769 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 227aa MW: 25914 Da PI: 9.715 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 61.1 | 2.7e-19 | 19 | 107 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+k+e+l+Liea++e++ lr ++lk+ +W +vs+++ + +s++qC++k+e+l++r++++k+++ k++ + ss++ +f l+
Gh_D08G1769 19 CWSKEETLVLIEAYKEKWFVLRCQNLKASDWGAVSSAVsfaSGPETMKSSVQCRHKIEQLRQRFRAEKQRSLKNRGKFSSSWDLFPLLD 107
8*************************************9866666789*************************99**********9886 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF13837 | 5.5E-19 | 18 | 109 | No hit | No description |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 227 aa Download sequence Send to blast |
MATPQSYSAT ATQRVAPPCW SKEETLVLIE AYKEKWFVLR CQNLKASDWG AVSSAVSFAS 60 GPETMKSSVQ CRHKIEQLRQ RFRAEKQRSL KNRGKFSSSW DLFPLLDSMN FVPVSVNGSA 120 DQENLYYNKD GGFCWKLKNH EKIYGNLGPE LGVKNGNGGV KRGMDPVEEM VSSIKLLAEG 180 FVRMEKMKIE MVKDVEKTRM KMEMKHNEMI LESRQKIMDV FAKALLE |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Ghi.21161 | 5e-54 | boll | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016667380.1 | 1e-106 | PREDICTED: uncharacterized protein LOC107887646 | ||||
| TrEMBL | A0A2P5RHR2 | 1e-107 | A0A2P5RHR2_GOSBA; Uncharacterized protein | ||||
| STRING | EOY24171 | 9e-61 | (Theobroma cacao) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM10483 | 18 | 28 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G44730.1 | 4e-21 | Trihelix family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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