PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0044
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 347aa    MW: 40872.7 Da    PI: 4.2707
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0044genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.91.1e-1299183286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt+qe+ +L+e+  ++  +l+r++l++ +W ++++k+  + +  ++  qC+  ++ l++++kk+k  +++    +ss++++f+++e
  Gh_D07G0044  99 WTQQEIYVLLEVWGNRFLQLGRRSLRGEDWVDIAEKVsDALKSMKNEAQCRRMIDGLKRKFKKEKSKAERM-GLNSSKWVFFRKME 183
                  *************************************77889999*********************99986.89999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-1598184No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDGVEPYSFN RHPQYPRSTR TRHVYSYGPD EELDDEEEME LDNEDVDDDN DDDPDVYYHR  60
VKESERFERY PKRQKVRTSV PSFQYAPDHR DSLKNAYDWT QQEIYVLLEV WGNRFLQLGR  120
RSLRGEDWVD IAEKVSDALK SMKNEAQCRR MIDGLKRKFK KEKSKAERMG LNSSKWVFFR  180
KMEMLMGLGS SSFRQQESWL ACGVDSGEFV FMNPQVYLDR SNGFDEMRDS PAESEIDDDD  240
DDGEEADGGS MKVDVNDERS LRMLADSVQR FGKIYEKIES SKREHMKELE KMRMDFQKEL  300
EVQKQQILER AQAEIAKMKE EDDDDDDETD DDDDGNDNGD STENISE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.153760.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098586360.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9645521e-138JX964552.1 Gossypium hirsutum clone NBRI_TRANS-821 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016720627.10.0PREDICTED: trihelix transcription factor ASIL2-like isoform X1
TrEMBLA0A1U8M1F20.0A0A1U8M1F2_GOSHI; trihelix transcription factor ASIL2-like isoform X1
STRINGGorai.001G004200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97792733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-83Trihelix family protein