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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G1550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 338aa MW: 37824.7 Da PI: 8.5764 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 55.7 | 1.3e-17 | 19 | 110 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt +e+++Liea++ ++er rgk + +W++v +++++rg+ rs++qC++kw+nl ++ykk++e +++ t++++ + + ++e Gh_D06G1550 19 WTVSETMVLIEAKKMDDERRMkkswegegRGKPTELRWKWVEDYCWRRGCLRSQNQCNDKWDNLTRDYKKVREYQRR-TAGAEDNQGSYWEME 110 **************66666552222222246799*****************************************98.577777888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.818 | 11 | 83 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.4E-12 | 18 | 110 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MADQGGNNIG MREYRKGNWT VSETMVLIEA KKMDDERRMK KSWEGEGRGK PTELRWKWVE 60 DYCWRRGCLR SQNQCNDKWD NLTRDYKKVR EYQRRTAGAE DNQGSYWEME KNERKEKNLP 120 TNMLRQIYEC LEEMVEKKGG QRVVLPATAT ASGSLPIPNI PDVMDRPIAS VQLPPILQHQ 180 LPPIPAAVPL PLTALPQLPL PAAAPTPLLQ PPFSYAQPLP TVDSDTSEYS DSLAKRRRRS 240 GGNGEGTSNG AATANNSNEA GAAISKSASI IAEAIQASEE NEERRHRDLV SLHERILKIE 300 ESKTEINKRG IDGLVDAINK LANSILAFAS HKNQSAPK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2547 | 1e-100 | boll| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016683561.1 | 0.0 | PREDICTED: trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A1U8IZP8 | 0.0 | A0A1U8IZP8_GOSHI; trihelix transcription factor ASR3-like | ||||
STRING | Gorai.010G171500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3493 | 26 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 3e-60 | Trihelix family protein |