PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1685
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 251aa    MW: 29515.1 Da    PI: 9.1866
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1685genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.14.8e-18193686
     trihelix  6 evlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86
                 +v++Li+a+ +++e+ ++++            k ++W+ vsk m ++g+++sp+qC++k+++lnkryk+++   +k+ +++++++  ++d ++
  Gh_D04G1685  1 MVKLLINAVCYIDEDASSDCqggvkrklsmsHKIGKWRCVSKLMVKGGYRVSPQQCEDKFNDLNKRYKRLNGVLGKGtSCKVVEKPELLDVMD 93
                 6999************998777777888888999*******************************************5699999998888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-141117No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVKLLINAVC YIDEDASSDC QGGVKRKLSM SHKIGKWRCV SKLMVKGGYR VSPQQCEDKF  60
NDLNKRYKRL NGVLGKGTSC KVVEKPELLD VMDVSDKVKE EVKKILSSRN LFYEEMCFYH  120
TGNRLYLPQD PKLQCSLQSR QYNGDDEFKK ELHDAEPDDV FCKGNDVSLN GMEYGKSSAY  180
RLQEQWMAFR LLELQKQKLQ IQVQKLELEK KRFKWRRTNW NQDKDLDKMR LENECMKLAN  240
ERLAFELGTR K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613026.11e-168PREDICTED: uncharacterized protein LOC108458225
TrEMBLA0A2P5RD961e-179A0A2P5RD96_GOSBA; Uncharacterized protein
STRINGGorai.012G159500.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2820933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-51