PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G1811
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 399aa    MW: 43891.5 Da    PI: 8.0769
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G1811genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.67.2e-101153440
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v
  Gh_D01G1811 11 RACDSCIKKRARWYCAADDAFLCQACDSSVHSAnplarrHKRV 53
                 78*****************************668888889887 PP
2CCT68.22.2e-23343386144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Gh_D01G1811 343 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 386
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.4E-11855IPR000315B-box-type zinc finger
PROSITE profilePS5011910.808855IPR000315B-box-type zinc finger
PfamPF006431.1E-71153IPR000315B-box-type zinc finger
CDDcd000212.39E-111155No hitNo description
PROSITE profilePS5101716.083343385IPR010402CCT domain
PfamPF062036.5E-18343385IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MANAVGAKTV RACDSCIKKR ARWYCAADDA FLCQACDSSV HSANPLARRH KRVRLKTASV  60
KSSGDELPLE SFSPSWDRGF TRKARTRRPV KGSIHRKPLK AKNNPVPVVP EVGIDEIFDP  120
FVAELCTSTT STEAAVSAVG NEAETAATES KAFMGQDVDG SHGLFPSEMD LAEFAADVES  180
LLGKGLENES FTMVELGLTG SKDLREYSYG NGQVKIEDEE SFEGGMVREP FELSFNYDSP  240
PSCGGVDELV KEEVEVKSKE GGECQENTAK KKKRKTLLNL DYEAVITAWA TQGSPWTSGG  300
KPDLDPDECW PDCMGNGGTE VQQSYSGLIG MGGQQQAMGD GGREARVSRY REKRRTRLFS  360
KKIRYEVRKL NAEKRPRMKG RFVKRASFLT GPAFPLLNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269274KKKKRK
2353369RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.228000.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6183350.0JQ618335.1 Gossypium hirsutum constans-like protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016706545.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like isoform X2
SwissprotQ8RWD01e-98COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2P5S8800.0A0A2P5S880_GOSBA; Uncharacterized protein
STRINGGorai.002G218400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-90B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]