PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D01G0956

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SRS

Protein Properties

Length: 308aa MW: 34287 Da PI: 6.982

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D01G0956	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	230.4	3.1e-71	92	242	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 ++g+++CqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++++ + ++ kr +++ + +l++t+ls ++s Gh_D01G0956 92 KHGGMNCQDCGNQAKKDCAHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQHHQQHEDQFRGENPKRLRENQGSPSLACTRLSPTTSG-- 187 6899****************************************************99999888555555555555688889999999988765.. PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 le ++P+evss+avfr+v+vs++dd++ee+aYqtav+i+GhvfkGiLydqG+e+ Gh_D01G0956 188 LELGQFPPEVSSPAVFRSVKVSAMDDEDEEFAYQTAVNIAGHVFKGILYDQGPES 242 88899**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.0E-67	95	241	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.1E-27	97	139	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.4E-25	192	240	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MAGLFYLGGR EADTGNKQEE DKEESLYLYR NEEIYNKGFE IWPQYYYHQQ QQQQQQENVN 60 TISFGAGPSR RARGFNLSDE PSSRSVGFTV MKHGGMNCQD CGNQAKKDCA HMRCRTCCKS 120 RGFQCQTHVK STWVPAAKRR ERQQQLAALQ HHQQHEDQFR GENPKRLREN QGSPSLACTR 180 LSPTTSGLEL GQFPPEVSSP AVFRSVKVSA MDDEDEEFAY QTAVNIAGHV FKGILYDQGP 240 ESHYTGGGES SQQLNLITAA VTTAETARTT TTAAISSNPA TSMLDPSLYP APLNAFIAGT 300 QFFPPPRS

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	72269798	3e-99

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616287	0.0	JX616287.1 Gossypium hirsutum clone NBRI_GE60826 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016670317.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	1e-101	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A1U8HWC8	0.0	A0A1U8HWC8_GOSHI; protein SHI RELATED SEQUENCE 5-like
STRING	Gorai.002G125600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	5e-90	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]