PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1580
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 338aa    MW: 37460.9 Da    PI: 5.9568
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1580genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.29.1e-10445439
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 + C+ +++  ++lfC+ ++ +lC++C +++H        H +
  Gh_A13G1580  4 KLCDSCKSATATLFCRPDSAFLCPNCDSKIHAAnklasrHAR 45
                 68*****************************65566666655 PP
2zf-B_box24.65.3e-084791442
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                  +C+ +e+ +++  C+ +   lC +C   +H+       H++vpl
  Gh_A13G1580 47 LVCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplacrHERVPL 91
                 68*****************************66999999*99986 PP
3CCT68.81.4e-23275318144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Gh_A13G1580 275 REARVLRYREKRKNRKFEKTIRYASRKAYAEVRPRIKGRFAKRS 318
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.48148IPR000315B-box-type zinc finger
SMARTSM003362.6E-13148IPR000315B-box-type zinc finger
PfamPF006434.2E-7445IPR000315B-box-type zinc finger
CDDcd000218.68E-8548No hitNo description
PROSITE profilePS5011910.9074491IPR000315B-box-type zinc finger
PfamPF006432.9E-64791IPR000315B-box-type zinc finger
CDDcd000214.63E-84891No hitNo description
SMARTSM003362.1E-84991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.618275317IPR010402CCT domain
PfamPF062032.4E-17275317IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRP DSAFLCPNCD SKIHAANKLA SRHARVLVCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLACRHERVP LAPFYDSVKP NTAFNFLDDR YFSDVDGDAD  120
SSREEAEAAS WLLPNPNHKA HESPDVNTGQ YVFPEMDPYL DLDYGHVDPK METPDQDQNS  180
SGTDGVVPVQ SNTVQAPMIN DHCFDMEFTT PKAFPYGYNY NCNYNPHCLS HSVSSSSLDV  240
GVVPDGGSTI TDVSVPCAKV TETTYQTVQL SLAEREARVL RYREKRKNRK FEKTIRYASR  300
KAYAEVRPRI KGRFAKRSDV EVEVDGGNMY GFGVVPSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.121570.0boll| ovule| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0069100.0HM006910.1 Gossypium hirsutum CONSTANS-like 4 (CO) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313742.10.0zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-143COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A0D3R2500.0A0A0D3R250_GOSHI; CONSTANS-like 3 protein
STRINGGorai.010G245200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-131CONSTANS-like 4
Publications ? help Back to Top
  1. Zhang R, et al.
    Molecular evolution and phylogenetic analysis of eight COL superfamily genes in group I related to photoperiodic regulation of flowering time in wild and domesticated cotton (Gossypium) species.
    PLoS ONE, 2015. 10(2): p. e0118669
    [PMID:25710777]