PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G0504
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 477aa    MW: 52427.5 Da    PI: 7.6393
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G0504genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.34.7e-066597335
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                 e++C+ +  +++  +C++++  lC +C    H+
  Gh_A13G0504 65 EPVCDFCRGERAVVYCKSDSARLCLSCDGCVHS 97
                 789************************998885 PP
2CCT58.81.9e-20421464144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R++a+ RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ 
  Gh_A13G0504 421 RDKAKIRYNEKKKTRIFGKQIRYASRKARADTRKRVKGRFVKAG 464
                  888999***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.9E-1263110IPR000315B-box-type zinc finger
CDDcd000215.15E-566110No hitNo description
PROSITE profilePS501199.51367109IPR000315B-box-type zinc finger
PfamPF062036.2E-16421463IPR010402CCT domain
PROSITE profilePS5101714.426421463IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MTAIKSHVHV ILECPIHKAN IAPRGKHPSN LGQTVVSVRI EESIEPNYRP TAVVYCKVRR  60
NNGMEPVCDF CRGERAVVYC KSDSARLCLS CDGCVHSANL LSRRHVRSLL CEKCNSQSAV  120
VRCLDEKLSL CQDCDGNGNG CWSLGHWREA LNSYTDCPSL AEFRRIWSSV LGASSPAVFD  180
VDWPVGASAA NDNCFTNCLN QIDQGGSFEL AGTKLNELDS CPKLKPCMVS SSLISPNANY  240
VPYCNDGEPV FSEEPNMPKG YSDLRDFKVP DGDDLCEGLN INDVQFSFET ANEIFGGSQG  300
QTRYQFEKVG TDCLIMDKTL PALPSGQKEC QPFPSPQVGC SASMMATMIG TSNCMLMNPG  360
CNRNINLGYP VGQVPSNLAP SPSNITVKTS PAGFQDCGLP PGFLTGDSHF QNLEVSCPQA  420
RDKAKIRYNE KKKTRIFGKQ IRYASRKARA DTRKRVKGRF VKAGEEYDYD PLVARNF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5780786e-36JX578078.1 Gossypium hirsutum clone NBRI_GE10025 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703838.10.0PREDICTED: putative zinc finger protein CONSTANS-LIKE 11
TrEMBLA0A2P5YGK50.0A0A2P5YGK5_GOSBA; Uncharacterized protein
STRINGGorai.013G071300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53192240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.15e-91B-box type zinc finger protein with CCT domain