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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G2206 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 790aa MW: 85874.5 Da PI: 5.7632 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 95.9 | 3.7e-30 | 89 | 173 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ k+plWe+vs+k++e g++rs+k+C+ek+en++k+yk++ke++ +r++++s +++f+qlea Gh_A12G2206 89 RWPRQETLALLKIRSDMDATFRDATVKGPLWEDVSRKLAELGYKRSAKKCREKFENVHKYYKRTKETRAGRQDGKS--YKFFSQLEA 173 8*********************************************************************866665..*******85 PP | |||||||
2 | trihelix | 109 | 3e-34 | 530 | 615 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evl+Li++r+ +e+r++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a Gh_A12G2206 530 RWPKAEVLTLINLRSGLESRYQEAGPKGPLWEEISAGMSRLGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 615 8*********************************************************************8.99999********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0048 | 86 | 148 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 5.76E-28 | 88 | 153 | No hit | No description |
PROSITE profile | PS50090 | 6.667 | 88 | 146 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 7.5E-21 | 88 | 174 | No hit | No description |
SMART | SM00717 | 0.042 | 527 | 589 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.679 | 529 | 587 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.1E-23 | 529 | 616 | No hit | No description |
CDD | cd12203 | 2.39E-31 | 529 | 594 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 790 aa Download sequence Send to blast |
MQQEGGGGGG GGQQSQYGEM TTGPPTTGAV SEASEQLVEA ASPISSRPPA GNLDEFMRLA 60 SVGGGDELGL GDRHGSGGGG GAGVASGNRW PRQETLALLK IRSDMDATFR DATVKGPLWE 120 DVSRKLAELG YKRSAKKCRE KFENVHKYYK RTKETRAGRQ DGKSYKFFSQ LEALQTTSGA 180 APANLSIPVI PATVAVTAAS LDVAPVSVGI RMPISSAARI VPPTTAVPMS SSSFLSMPGS 240 ALAPVPVAVP EPAMAPAPAP PAATTAAPFG ISFSSNSSTF SQGFDDDEED EDEVGVGGEP 300 SSMAGTSRKR KRSSSRGGGG STTRRMMEFF EGLMKQVMQK QETMQQRFLE AMEKREQDRT 360 IREEAWKRQE MARLTREHEL MAQERAIAAS RDAAIVSFLQ KITGQTIQLP TTATVIVPAP 420 APPPPPPPTQ PTVSVVPPEV PIAPPSHQTP SLTQQKQQEQ QQTHISHHQP PPPQQQPQVV 480 QQQQQLHNME LVRHQQQPIT TEIVMAIPEQ QVPPQEISGS GSLVEPASSR WPKAEVLTLI 540 NLRSGLESRY QEAGPKGPLW EEISAGMSRL GYKRSAKRCK EKWENINKYF KKVKESNKKR 600 PEDAKTCPYF HQLDALYRKK ILGGGTSSGS FSDHNRPDEE TSRQHHDPTL STAAPQPSQN 660 ETGATADVVT SKEGLPSHPF GEGNGGAAKK PGSTVRELME EQREGLHHQQ HHHRGQSLLV 720 DGYGRIDEPD SDIMDQEVDE DDDEEDNDDD DDEELEEERK MGYKIEFQRQ NSNTPNGGGN 780 GAPSFFTMVQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3065 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016716502.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1-like isoform X1 | ||||
Swissprot | Q39117 | 4e-69 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A1U8LPL0 | 0.0 | A0A1U8LPL0_GOSHI; trihelix transcription factor GTL1-like isoform X1 | ||||
STRING | Gorai.008G262400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6226 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 2e-55 | GT-2-like 1 |