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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G1271 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 197aa MW: 22740.2 Da PI: 6.7963 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 59.1 | 1.1e-18 | 21 | 107 | 2 | 87 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 Wt+qe+l Li+a++e++ +l+r+klk+ +W+ev + + +++ qC++k+e+l++ry+ +++g ++ ++py+d +ea Gh_A11G1271 21 WTHQETLNLIQAYQEKWYSLQRSKLKAWQWQEVVVTVavrcghLDDSPAKTALQCRHKMEKLRRRYRSERQGLASG-----AHWPYYDAMEA 107 ********************************99988888888777789999**********************97.....57*******85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.5E-18 | 20 | 108 | No hit | No description |
SMART | SM00595 | 1.5E-6 | 28 | 113 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MSNISPVADP TPGKKSQPLP WTHQETLNLI QAYQEKWYSL QRSKLKAWQW QEVVVTVAVR 60 CGHLDDSPAK TALQCRHKME KLRRRYRSER QGLASGAHWP YYDAMEALEH EPLPISARPL 120 ASLVPTRGLN FYSENGHEAG NNYYSNYVVE EEQEDYYYDD EEENNQFSKS RSINNILRRP 180 SAVNRFSGFL SGGEGKD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016709044.1 | 1e-147 | PREDICTED: trihelix transcription factor ASIL1-like | ||||
TrEMBL | A0A1U8L7B6 | 1e-146 | A0A1U8L7B6_GOSHI; trihelix transcription factor ASIL1-like | ||||
STRING | Gorai.007G154900.1 | 1e-115 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10281 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24860.1 | 2e-38 | Trihelix family protein |