PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G2343
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 593aa    MW: 67171.9 Da    PI: 6.9287
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G2343genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.21.1e-28409492185
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                  rW+  ev aLi++r ++e+++r+  lk+p We+vs+ m++ g++rs+k+Ckekwen+nk+++k ke+ kkr s++s+tc+yfdql
  Gh_A07G2343 409 RWPIAEVEALIQVRCDLESKFREPGLKGPVWEQVSSLMSSFGYQRSAKKCKEKWENINKYFRKSKESGKKR-SQQSKTCSYFDQL 492
                  8*********************************************************************8.78889*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122035.12E-24408473No hitNo description
PROSITE profilePS500906.33409466IPR017877Myb-like domain
PfamPF138372.8E-20409494No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MHPIKYGAHH HHHHHHHLQQ QQFMEDDDAS SSASIFFISN PHNHQQQPVF PYPSQQHNKQ  60
HENPVTHQLF HHQFQPFQHP EPVHHHSQQQ QQPFLAVNFK LGLNENSGKK EAALPLNHQQ  120
NGATFLDGNE QQQQHSPFLP RCLPPQEDFP IKEPFWKPLN RCDDRQCSAD GAKMIEGTKY  180
NKVWQQPGQS TSERSRNLDS KYGLFGELEA IYGLGKRGEA AQAGSGSALT GENWPANVGP  240
SMNLTKFQEH DVVGANGGGG NVVATGVDHG SEASIGKEAS LRKVQKKKRK MKMKEQLSSM  300
VVFFESLVKQ VTDHQECLHK RFLQFIERME KERSVKEESW RQQEAEKHNR EAVARAHEQA  360
LASSREALIV SYLEKITGES INLPGKTPLQ QPGNAMEPFN GVKVDNSIRW PIAEVEALIQ  420
VRCDLESKFR EPGLKGPVWE QVSSLMSSFG YQRSAKKCKE KWENINKYFR KSKESGKKRS  480
QQSKTCSYFD QLGQLYSRIP ITCPTSPTPL INNDIEVQKQ GDSDFLEAYL PERDLVTAQV  540
NISGNLKDSE MNIPKLDFDG IVGENVAEGS KVKYNESHES ELDGDDNDSD KGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280289LRKVQKKKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016717006.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A2P5VT690.0A0A2P5VT69_GOSBA; Uncharacterized protein
STRINGGorai.001G020300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16469813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-47Trihelix family protein