PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1834
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 269aa    MW: 31029.8 Da    PI: 5.7644
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1834genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.32.7e-2017102286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt+ e+l Li+a++e++ +l+rg+lk+++Weev+  +       +    +++ qC++k+e+l++ry+ ++++ ++      s +py+d +e
  Gh_A07G1834  17 WTHPETLNLIQAYQEKWYSLQRGQLKANQWEEVAVTVatrcglFDDSAAKTALQCRHKMEKLRRRYRSERQNLGSA-----SPWPYYDAME 102
                  *************************************999999889999*************************84.....57*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-1916104No hitNo description
SMARTSM005951.2E-524109IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSYDPSPAAK KPQPLPWTHP ETLNLIQAYQ EKWYSLQRGQ LKANQWEEVA VTVATRCGLF  60
DDSAAKTALQ CRHKMEKLRR RYRSERQNLG SASPWPYYDA MESLEQGPLP ISARPLASIV  120
PNGHEAGNYY HNDDENNPIE EEEEDDEEHE GGNRFSKSRS INYILRRPSV VNRFSGLMKK  180
RVRTEEEGDG DGDAAITGKG EEDKGVELAM EIRRFAERVM RLERKKMEIM HETERLRMEM  240
ENKRIEMILD SEKKIVDAIS TSLGSKTKE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430730.0AC243073.1 Gossypium arboreum clone GAH004E09-jgx, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016732999.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A1U8N5830.0A0A1U8N583_GOSHI; trihelix transcription factor ASIL1-like
STRINGGorai.001G233700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.14e-67Trihelix family protein