PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G1646

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 399aa MW: 46022.2 Da PI: 4.375

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G1646	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.1	2e-17	168	252	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ r +r++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk+k++ + t ++ss+++yf++++ Gh_A06G1646 168 WTERETFVLLDAWGDLFLRRGRKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKAMLAE-TGGTSSKWVYFKKMD 252 ***********************************762678**********************9.699999******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.2E-22	167	254	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.5E-5	168	232	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.481	168	225	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MDNVEDNARH PSNPYDVGHQ PGYGSSNHQK LSVRNNPYVR PTGNQYVVDD EEEEEEENDE 60 DLEEEENRNR NNGVRYVGKD MDDVDDDDND ELDDEEDGDE DDYDENGDKQ KGYDGKNDDV 120 DMERHPKKRK LKSLLSSYEF APRVPAPAVS APSVPKPSFG GRNSLTDWTE RETFVLLDAW 180 GDLFLRRGRK SLRSEEWQEV AEKVSEVSKI ERTDTQCRNR LDTLKKKYKK EKAMLAETGG 240 TSSKWVYFKK MDMLMSTPPQ QGGLSCGLDS GEYVFMNPRV YLNRANGLDE MRDSPADSDS 300 ADSEEDVSDG LPPKKRKFGR QYDEGCSFRL LADLIQKFSD TYEKIEDSKR QQMLELEKMR 360 MDFHRELEMQ KQHIMERAQA EIAKIQQQAD DDENEKASG

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MDNVEDNARH PSNPYDVGHQ PGYGSSNHQK LSVRNNPYVR PTGNQYVVDD EEEEEEENDE  60
DLEEEENRNR NNGVRYVGKD MDDVDDDDND ELDDEEDGDE DDYDENGDKQ KGYDGKNDDV  120
DMERHPKKRK LKSLLSSYEF APRVPAPAVS APSVPKPSFG GRNSLTDWTE RETFVLLDAW  180
GDLFLRRGRK SLRSEEWQEV AEKVSEVSKI ERTDTQCRNR LDTLKKKYKK EKAMLAETGG  240
TSSKWVYFKK MDMLMSTPPQ QGGLSCGLDS GEYVFMNPRV YLNRANGLDE MRDSPADSDS  300
ADSEEDVSDG LPPKKRKFGR QYDEGCSFRL LADLIQKFSD TYEKIEDSKR QQMLELEKMR  360
MDFHRELEMQ KQHIMERAQA EIAKIQQQAD DDENEKASG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016725700.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A1U8MFZ9	0.0	A0A1U8MFZ9_GOSHI; trihelix transcription factor ASIL1-like
STRING	Gorai.010G228000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15605	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	7e-59	Trihelix family protein