PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G1228

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 353aa MW: 39239.4 Da PI: 8.2943

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G1228	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.3	3.4e-17	34	125	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt +e+++Liea++ ++er +++ + +W++v +++++rg+ rs++qC++kw+nl ++ykk++e +++ t++++ + + ++e Gh_A06G1228 34 WTVNETMVLIEAKKMDDERRMKKSwegegkgkPTELRWKWVEDYCWSRGCLRSQNQCNDKWDNLMRDYKKVREYQRR-TAGAEDNQGSYWEME 125 ***********97766666532222233339999*************************************98.577777888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.039	26	98	IPR017877	Myb-like domain
Pfam	PF13837	1.5E-12	33	125	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MVVNTLPTGV AGTLAMADQG GNNIGMREYR KGNWTVNETM VLIEAKKMDD ERRMKKSWEG 60 EGKGKPTELR WKWVEDYCWS RGCLRSQNQC NDKWDNLMRD YKKVREYQRR TAGAEDNQGS 120 YWEMEKNERK EKNLPTNMLR QIYECLEEVV DKKGGQRVVL LATATASGSL PIPNIPDVMD 180 RPITSVQLPP ILQHQLPPIP AAVPLPLTAP PQLPLPTAAP TPLLQPPFSY AQPLPTVDSD 240 TSEYSDSLAK RRRRSGGNGE GTSSGAATAN NSNEAGIAIS KSASIIAEAI QASEENEERR 300 HRDLVSLHER ILKIEESKTE INKRGIDGLV DAINKLANSI LAFASHKNQS APK

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MVVNTLPTGV AGTLAMADQG GNNIGMREYR KGNWTVNETM VLIEAKKMDD ERRMKKSWEG  60
EGKGKPTELR WKWVEDYCWS RGCLRSQNQC NDKWDNLMRD YKKVREYQRR TAGAEDNQGS  120
YWEMEKNERK EKNLPTNMLR QIYECLEEVV DKKGGQRVVL LATATASGSL PIPNIPDVMD  180
RPITSVQLPP ILQHQLPPIP AAVPLPLTAP PQLPLPTAAP TPLLQPPFSY AQPLPTVDSD  240
TSEYSDSLAK RRRRSGGNGE GTSSGAATAN NSNEAGIAIS KSASIIAEAI QASEENEERR  300
HRDLVSLHER ILKIEESKTE INKRGIDGLV DAINKLANSI LAFASHKNQS APK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2547	1e-102	boll\| ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589902	2e-60	JX589902.1 Gossypium hirsutum clone NBRI_GE24692 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016753456.1	0.0	PREDICTED: uncharacterized protein LOC107961813
TrEMBL	A0A1U8PQM8	0.0	A0A1U8PQM8_GOSHI; uncharacterized protein LOC107961813
TrEMBL	A0A2P5XES3	0.0	A0A2P5XES3_GOSBA; Uncharacterized protein
STRING	Gorai.010G171500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-72	Trihelix family protein