PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A05G2702

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 391aa MW: 44709.9 Da PI: 6.7384

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A05G2702	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.9	9.8e-27	82	163	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem+ ++++k++k+lWe++s+km+e+gf rsp++C++kw+nl k++kk k+++++ s +++y++++e Gh_A05G2702 82 WVQEETRSLIGFRREMDGLFNTSKSNKHLWEQISAKMKEKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEIE 163 ******************************************************************84...556899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-4	72	143	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.49	74	138	IPR017877	Myb-like domain
SMART	SM00717	0.0028	78	140	IPR001005	SANT/Myb domain
CDD	cd12203	4.51E-29	80	145	No hit	No description
Pfam	PF13837	8.5E-21	81	165	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MYLSEKPRPI DLYKEEGPAA APRDMIIEVT SNGDLPPHHH HHHPPPPHHH HQHQQQQQQM 60 ILGESSGEDP EVKAPKKRAE TWVQEETRSL IGFRREMDGL FNTSKSNKHL WEQISAKMKE 120 KGFDRSPTMC TDKWRNLLKE FKKAKHQDRG SGSAKMSYYK EIEEILRERT KNAYKSPTPP 180 PKPDSFMHFA DKGFEDAGIS FGPVEASGRP TLNLERRLDH DGHPLAITAA DAVAASGVPP 240 WNWRETPGNG GDCQSYGGRV ITVKYGDYTR RIGIDGTADA IREAIKSAFG LRSKRSFWLE 300 DEDNIVRSFD REMPLGNYTL HLDEGLAIKV CLYDESDHIP VHTEDKIFYT EDDYREYLAR 360 RGYTGLRDID GYRSVDNMDD LRPNAIYRGV S

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MYLSEKPRPI DLYKEEGPAA APRDMIIEVT SNGDLPPHHH HHHPPPPHHH HQHQQQQQQM  60
ILGESSGEDP EVKAPKKRAE TWVQEETRSL IGFRREMDGL FNTSKSNKHL WEQISAKMKE  120
KGFDRSPTMC TDKWRNLLKE FKKAKHQDRG SGSAKMSYYK EIEEILRERT KNAYKSPTPP  180
PKPDSFMHFA DKGFEDAGIS FGPVEASGRP TLNLERRLDH DGHPLAITAA DAVAASGVPP  240
WNWRETPGNG GDCQSYGGRV ITVKYGDYTR RIGIDGTADA IREAIKSAFG LRSKRSFWLE  300
DEDNIVRSFD REMPLGNYTL HLDEGLAIKV CLYDESDHIP VHTEDKIFYT EDDYREYLAR  360
RGYTGLRDID GYRSVDNMDD LRPNAIYRGV S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-50	76	161	1	86	DNA binding protein GT-1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.307	0.0	boll\| ovule\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527209	1e-109	HQ527209.1 Gossypium herbaceum clone NBRI_D_EYT27PB02D0J5N simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016674620.1	0.0	PREDICTED: trihelix transcription factor GT-1-like
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1U8I8P5	0.0	A0A1U8I8P5_GOSHI; trihelix transcription factor GT-1-like
STRING	Gorai.009G333800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]