PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS68117.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

FAR1

Protein Properties

Length: 598aa MW: 67929.3 Da PI: 7.6398

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS68117.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.2	4.1e-21	32	116	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 ++Yn YA+e GFsvr+++s ++ ++e + + ++Cs +g+++ + + + r etrtgC a+++++ +g+w++ ++ l+HnH l EPS68117.1 32 NYYNYYARESGFSVRVKNSWFKRSSKEKYGAVLCCSSQGFKRVKGVN-----HIRRETRTGCPAMMRIRAVVsSGRWRILEVTLQHNHVL 116 69**************************************99988.....88999********9999*************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-18	32	116	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-19	219	311	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.84	492	530	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0035	503	532	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence Send to blast
DRAVEGSCIG KEIDFVAPSV GMEFDCYDDA YNYYNYYARE SGFSVRVKNS WFKRSSKEKY 60 GAVLCCSSQG FKRVKGVNHI RRETRTGCPA MMRIRAVVSS GRWRILEVTL QHNHVLGVKP 120 SNKKKPISSG VSSEPATLKL YRAVVVNSSE DRLKGSSRIP DQLNLKKGET QAMYNFLCRM 180 QLSNPNFSYL VDLTEDGRLR NVFWIDARSL ASACYFSDVV FFDDACLTNG YEAPVVGFFG 240 VNHHGRSVLL GCGLLSDGTV ESYTWFFRSW LSCNPGRIPR TVVTEKCEIL KIVVAEAFPS 300 SKHRFCLSRI VRRIPEKLGG LSNYEAVRKK LLKTVYESSK PVEFEAAWGF MIHHMGVADN 360 EWLRSLYEDR DLWAPVFQSD VCFVGISGVE ASTATFFDDY LQKQTSTKEF IDKYELAAYK 420 NHNEEVIADT ESRNSSPDLK TESPFEAQLS EAYTREIFRR FQVEVEATPS CLCTKLRDDA 480 FLVRESSEIR TYEVLFDSAA VEVSCVCCFF GFNFHGYLCR HALCVLSFNG VEEVPSKYIL 540 PRWNRDYKRL RIRDGIAAGT ELTKRYGELY GSAVGVVEEG AVCLERYKMA VELLESSL

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence Send to blast

DRAVEGSCIG KEIDFVAPSV GMEFDCYDDA YNYYNYYARE SGFSVRVKNS WFKRSSKEKY  60
GAVLCCSSQG FKRVKGVNHI RRETRTGCPA MMRIRAVVSS GRWRILEVTL QHNHVLGVKP  120
SNKKKPISSG VSSEPATLKL YRAVVVNSSE DRLKGSSRIP DQLNLKKGET QAMYNFLCRM  180
QLSNPNFSYL VDLTEDGRLR NVFWIDARSL ASACYFSDVV FFDDACLTNG YEAPVVGFFG  240
VNHHGRSVLL GCGLLSDGTV ESYTWFFRSW LSCNPGRIPR TVVTEKCEIL KIVVAEAFPS  300
SKHRFCLSRI VRRIPEKLGG LSNYEAVRKK LLKTVYESSK PVEFEAAWGF MIHHMGVADN  360
EWLRSLYEDR DLWAPVFQSD VCFVGISGVE ASTATFFDDY LQKQTSTKEF IDKYELAAYK  420
NHNEEVIADT ESRNSSPDLK TESPFEAQLS EAYTREIFRR FQVEVEATPS CLCTKLRDDA  480
FLVRESSEIR TYEVLFDSAA VEVSCVCCFF GFNFHGYLCR HALCVLSFNG VEEVPSKYIL  540
PRWNRDYKRL RIRDGIAAGT ELTKRYGELY GSAVGVVEEG AVCLERYKMA VELLESSL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073400.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X2
Refseq	XP_011073401.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X2
Refseq	XP_011073403.1	0.0	protein FAR1-RELATED SEQUENCE 6 isoform X2
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	S8E6T3	0.0	S8E6T3_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009766776.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]