PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS65770.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB_related
Protein Properties Length: 648aa    MW: 73781.9 Da    PI: 6.949
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS65770.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.9e-09592638347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      +W++  ++ l+ a k ++++   +W+++a+ ++ g+t +qck ++ ++
       EPS65770.1 592 AWSEVQEKALITALKAFPKDtnqRWERVAAAVP-GKTVNQCKKKFASL 638
                      8********************************.*********99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465658.64E-2145171IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1107.6E-2089188IPR001623DnaJ domain
SMARTSM002716.8E-1492167IPR001623DnaJ domain
PROSITE profilePS5007617.92393175IPR001623DnaJ domain
CDDcd062574.36E-1393164IPR001623DnaJ domain
PfamPF002261.5E-1693172IPR001623DnaJ domain
PRINTSPR006256.8E-798116IPR001623DnaJ domain
PRINTSPR006256.8E-7116131IPR001623DnaJ domain
PRINTSPR006256.8E-7147167IPR001623DnaJ domain
PROSITE patternPS006360152171IPR018253DnaJ domain, conserved site
SuperFamilySSF466897.49E-7450497IPR009057Homeodomain-like
PROSITE profilePS512936.514452507IPR017884SANT domain
SMARTSM007178.8E-5453506IPR001005SANT/Myb domain
PfamPF002491.1E-5456496IPR001005SANT/Myb domain
CDDcd001675.05E-4456496No hitNo description
PROSITE profilePS5129310.053588643IPR017884SANT domain
SMARTSM007173.8E-10589641IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-9589638IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-6592638IPR009057Homeodomain-like
PfamPF002493.7E-8592638IPR001005SANT/Myb domain
CDDcd001671.19E-6592639No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
SLLQISYSEE ITDGQPVCIC SNALPVKASK LEPAGHAFHD AALRLTGQFV EAFKSEDNGK  60
GISVEKEQAY VHSSDSFSSK GKKKSGGESQ QQDHYALLGL SHLRYLATED QIRKCYREAA  120
LRHHPDKQAA LLLAEETEEA KQVKKDKIES HFKAIQEAYE VLIDPVRRRI YDSTDEFDDE  180
IPCDCSPQEF FKVFGPAFLR NGRWSVNQPV PTLGDDGTLI DEVDGFYNFW YNFKSWREFP  240
HADEFDLEQA ESRDHKRWME RQNAKLSEKA RKEEYVRIRA LVDNAYKRDP RILRRKEEQK  300
ADKQRKKEEK FLARKLLEEE AARIAIEERR RKEEEEKIAA EAALNQKKLK EKEKKLLRKE  360
KTRFRTLANP ILSQNLLGLT DDDVETICSL LDKEQLRDLC DRMEGKEALL DRGKLLREII  420
VDDKNPNAED VNSKRNGPKS VTADSAYSSY QKSEAPWGKD EIELLRKGMQ KYPKGTSRRW  480
EVISEYVGTN RSVEEILKAT KTVLLQKPDP AKSFDAFLEK RKPAPTIASP LSTRVETSPV  540
TDNTTPENHP KSSGDSEKEK TPLDSGNEDV CNGSVHVEVE NGGVSSGSDG DAWSEVQEKA  600
LITALKAFPK DTNQRWERVA AAVPGKTVNQ CKKKFASLKE SFRNLKSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A3e-1718929220123Zuotin
5dje_B3e-1718929220123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328349RRRKEEEEKIAAEAALNQKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072931.10.0dnaJ homolog subfamily C member 2-like
TrEMBLS8CFT70.0S8CFT7_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_010067661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]