PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63993.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 314aa    MW: 34495 Da    PI: 4.9556
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63993.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.6e-10124147427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 e C++++++G CkyG  CkF+H+p
  EPS63993.1 124 EDCSYYMKFGSCKYGFFCKFNHPP 147
                 79********************97 PP
2zf-CCCH24.16.1e-08167191226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 kt  C+f + +G CkyG+ CkF+H+
  EPS63993.1 167 KTTGCKFIMTSGGCKYGNECKFSHV 191
                 66669999****************6 PP
3zf-CCCH36.11.1e-11213237226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C++++r+  CkyG++CkF+H+
  EPS63993.1 213 GESECPYYMRNASCKYGANCKFHHP 237
                 7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.197120148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5121148IPR000571Zinc finger, CCCH-type
SMARTSM003560.025121147IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7124147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.976165193IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4165192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-7167193IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5167191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6167193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249211239IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-4211238IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9213237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6215238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4217236IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSMDAMAAAE KLPETENDGR ISVSDDAPIP ATSSEETKPP PGEISDEAGL RIAIEEELRR  60
LIIEQAVFDA ADSRLRGGDG EEVSEIVEEG NRSTDSGDTA TEKFLRLFQN PDWLRSYPVR  120
ADAEDCSYYM KFGSCKYGFF CKFNHPPRPT SQYFKERPKR RDGNSEKTTG CKFIMTSGGC  180
KYGNECKFSH VSEKRFTPEI PELNFLGLPL RPGESECPYY MRNASCKYGA NCKFHHPDPT  240
SGGGGGGRSS SPPGFSNGNK AMSSQHAPSS SIASSWETTT PSLQTAMFRG STDPSDQETK  300
WHQESALRQG EGGD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072925.11e-57zinc finger CCCH domain-containing protein 67 isoform X2
TrEMBLS8DLZ00.0S8DLZ0_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.14e-50C3H family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]