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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS57880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | ERF | ||||||||
Protein Properties | Length: 149aa MW: 16734.5 Da PI: 8.0826 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.7e-18 | 7 | 56 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+Wv+eIr+p + +r++lg+f tae+Aa+ +++a++ + g EPS57880.1 7 RYRGVRQRH-WGSWVSEIRHP-----QlkTRIWLGTFETAEDAARVYDEAARIMCG 56 69******9.**********9.....445**********************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.66E-33 | 6 | 65 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-33 | 7 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.639 | 7 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-39 | 7 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-20 | 7 | 65 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-10 | 7 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MTRPQQRYRG VRQRHWGSWV SEIRHPQLKT RIWLGTFETA EDAARVYDEA ARIMCGAKAR 60 TNFPNESPSG NNLISASLMA KLQKCHLASL KLAQEQQSRA GEASKTRSQD NGGSNSNQGS 120 NPNRCDDDDE IEQMIQELLH YGSIELSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 6 | 70 | 4 | 69 | ATERF1 |
3gcc_A | 2e-17 | 6 | 70 | 4 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251328.1 | 4e-63 | PREDICTED: ethylene-responsive transcription factor ERF003 | ||||
Swissprot | Q94AW5 | 3e-56 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | S8BTJ5 | 1e-108 | S8BTJ5_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Lus10016815 | 3e-58 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1362 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 7e-54 | ERF family protein |
Publications ? help Back to Top | |||
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