PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_39997_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 464aa MW: 53589.9 Da PI: 6.3617

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_39997_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.2	2.5e-29	39	123	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW++qe+laL+++r+em+ ++r++ k+plWeevs+k++e g++rs+k+Ckek+en+ k+++++keg+++++ + +++++f+ Cotton_A_39997_BGI-A2_v1.0 39 RWPRQETLALLKIRSEMDVAFRDSGVKAPLWEEVSRKLAELGYNRSAKKCKEKFENVYKYHRRTKEGRSGKS--NGKNYRFFE 119 8******************************************************************974..4457* PP trihelix 84 qlea 87 qlea Cotton_A_39997_BGI-A2_v1.0 120 QLEA 123 85 PP
2	trihelix	104.8	6.2e-33	303	388	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW+k+ev aLi++r++++ +++++ k+plWe++s +m++ g+ rs+k+Ckekwen+nk++k++ke++kkr +e+s+tcpyf+ Cotton_A_39997_BGI-A2_v1.0 303 RWPKDEVEALIRLRTNLDMQYQDTGPKGPLWEDISTAMKKLGYDRSAKRCKEKWENMNKYFKRVKESNKKR-PEDSKTCPYFH 384 8*******************************************************************8.99***** PP trihelix 84 qlea 87 ql+a Cotton_A_39997_BGI-A2_v1.0 385 QLDA 388 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.399	32	96	IPR017877	Myb-like domain
SMART	SM00717	2.7E-4	36	98	IPR001005	SANT/Myb domain
Pfam	PF13837	1.8E-19	38	124	No hit	No description
CDD	cd12203	1.42E-23	38	103	No hit	No description
PROSITE profile	PS50090	7.677	296	360	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.9E-5	299	360	IPR009057	Homeodomain-like
SMART	SM00717	0.001	300	362	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.91E-5	301	372	IPR009057	Homeodomain-like
Pfam	PF13837	1.0E-23	302	389	No hit	No description
CDD	cd12203	1.66E-24	302	367	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MENSSFPESN TVGDNVSLEN EEEAKVKNEE SEGNFSGNRW PRQETLALLK IRSEMDVAFR 60 DSGVKAPLWE EVSRKLAELG YNRSAKKCKE KFENVYKYHR RTKEGRSGKS NGKNYRFFEQ 120 LEALDHHPSL VPPASGDINT SVEPLNVIHD AIPFSVRNPA SNFNETSTST TSSSSKESDG 180 TRKKKRKLTD FFERLMREMM EKQENLQKKF IEAIEKSEQD RMAREEAWKV QELARLKRER 240 ELLVQERSIA AAKDAAVLAF LQKFSDQTTS VQLPDISFAV EKVVDRQENS NGSESYMHLS 300 TSRWPKDEVE ALIRLRTNLD MQYQDTGPKG PLWEDISTAM KKLGYDRSAK RCKEKWENMN 360 KYFKRVKESN KKRPEDSKTC PYFHQLDALY KEKTKRIDGS GYELKPEELL MHMMGAQEER 420 LHQESATEDV ESENVNQNRE ENRNAEGDAY QIVANDPSPM PILG

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MENSSFPESN TVGDNVSLEN EEEAKVKNEE SEGNFSGNRW PRQETLALLK IRSEMDVAFR  60
DSGVKAPLWE EVSRKLAELG YNRSAKKCKE KFENVYKYHR RTKEGRSGKS NGKNYRFFEQ  120
LEALDHHPSL VPPASGDINT SVEPLNVIHD AIPFSVRNPA SNFNETSTST TSSSSKESDG  180
TRKKKRKLTD FFERLMREMM EKQENLQKKF IEAIEKSEQD RMAREEAWKV QELARLKRER  240
ELLVQERSIA AAKDAAVLAF LQKFSDQTTS VQLPDISFAV EKVVDRQENS NGSESYMHLS  300
TSRWPKDEVE ALIRLRTNLD MQYQDTGPKG PLWEDISTAM KKLGYDRSAK RCKEKWENMN  360
KYFKRVKESN KKRPEDSKTC PYFHQLDALY KEKTKRIDGS GYELKPEELL MHMMGAQEER  420
LHQESATEDV ESENVNQNRE ENRNAEGDAY QIVANDPSPM PILG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	187	KKKRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017638839.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
Swissprot	Q39117	1e-126	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A2P5YU32	0.0	A0A2P5YU32_GOSBA; Uncharacterized protein
STRING	Gorai.008G099700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5995	28	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-120	Trihelix family protein