PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_36235_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 320aa MW: 35764.5 Da PI: 9.1724

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_36235_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.5	3.6e-55	11	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeel+++yL +k+++ +++ ++i++vd++k+ePwdLp k+k +ekewyfFs rd+ky+tg r+nrat++gyW Cotton_A_36235_BGI-A2_v1.0 11 LPPGFRFHPTDEELITFYLVNKISDANFTG-RAIADVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYW 92 79***********************999.89***********99999************************** PP NAM 84 katgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+tgkdke++++ ++elvg+kktLvfy+grap+gekt+Wvmheyr+ Cotton_A_36235_BGI-A2_v1.0 93 KTTGKDKEIFNSnsrvTSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRI 141 *******966666667*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-63	9	162	IPR003441	NAC domain
PROSITE profile	PS51005	60.089	11	162	IPR003441	NAC domain
Pfam	PF02365	2.6E-28	12	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MEGDKGKEET LPPGFRFHPT DEELITFYLV NKISDANFTG RAIADVDLNK CEPWDLPGKA 60 KMGEKEWYFF SLRDRKYPTG VRTNRATNTG YWKTTGKDKE IFNSNSRVTS ELVGMKKTLV 120 FYRGRAPRGE KTNWVMHEYR IHSKSSFRTN KEEWVVCRVF QKSAGLKKYP SASNQSRAAV 180 NPYNLDIGGG SLLPMMQAEN YHLSMGAELS RVLRGGPSCS ANLPIPSQIN YPVPGGFTIS 240 GLNLNLGGGS TQPVMRPMQP PPPPPMLQHQ DVTPSLMNTA TFGAEGGYGA EITTQNANGP 300 TNRYLSMDHC MDLDNYWPTY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	2	168	8	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	2	168	8	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	2	168	8	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	2	168	8	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	2	168	11	174	NAC domain-containing protein 19
3swm_B	2e-55	2	168	11	174	NAC domain-containing protein 19
3swm_C	2e-55	2	168	11	174	NAC domain-containing protein 19
3swm_D	2e-55	2	168	11	174	NAC domain-containing protein 19
3swp_A	2e-55	2	168	11	174	NAC domain-containing protein 19
3swp_B	2e-55	2	168	11	174	NAC domain-containing protein 19
3swp_C	2e-55	2	168	11	174	NAC domain-containing protein 19
3swp_D	2e-55	2	168	11	174	NAC domain-containing protein 19
4dul_A	2e-55	2	168	8	171	NAC domain-containing protein 19
4dul_B	2e-55	2	168	8	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448489.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1 isoform X2
Refseq	XP_017645279.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
TrEMBL	A0A1U8PQC5	0.0	A0A1U8PQC5_GOSHI; NAC domain-containing protein 79-like isoform X2
STRING	Gorai.010G124100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6851	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-103	NAC domain containing protein 38