PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_32681_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 379aa MW: 43655.8 Da PI: 6.4094

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_32681_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.9	1.6e-29	63	148	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f Cotton_A_32681_BGI-A2_v1.0 63 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMaEEYGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFF 143 8***********************************7788************************97..66678 PP trihelix 83 dqlea 87 +qlea Cotton_A_32681_BGI-A2_v1.0 144 KQLEA 148 *85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.853	56	121	IPR017877	Myb-like domain
CDD	cd12203	1.52E-19	62	128	No hit	No description
Pfam	PF13837	7.3E-21	62	149	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MALSPPPYHE PPYVLSNGNI AMPSGLLRFN TTGATDFTAA ASASAAVGGG GWSLGNIDGG 60 NSRWPRQETL TLLEIRSRLD SKFKEANQKG PLWDEVSRIM AEEYGYQRSG KKCREKFENL 120 YKYYKKTKEG KAGRQDGKNY RFFKQLEAIY GETSNPSSVP ETNNISTVPS NLPEKYHESM 180 QEQKMSESLG FSDPEFEASS SEKMNDDECE LSGIASMVNQ KGVKKGWKSK VKDFVDSQMK 240 RLIDSQDVWM ERMLKVIEEK EKERVLREEE WRRQEAARFD KEHELWVKER AWIEARDASL 300 MAALKTLRPL TAKTQNEINA NRWTEHEILE RRLQENGYST RQSTWEDIEA KMVNLGYGYE 360 HEANNAECYK KRKEDYLSS

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MALSPPPYHE PPYVLSNGNI AMPSGLLRFN TTGATDFTAA ASASAAVGGG GWSLGNIDGG  60
NSRWPRQETL TLLEIRSRLD SKFKEANQKG PLWDEVSRIM AEEYGYQRSG KKCREKFENL  120
YKYYKKTKEG KAGRQDGKNY RFFKQLEAIY GETSNPSSVP ETNNISTVPS NLPEKYHESM  180
QEQKMSESLG FSDPEFEASS SEKMNDDECE LSGIASMVNQ KGVKKGWKSK VKDFVDSQMK  240
RLIDSQDVWM ERMLKVIEEK EKERVLREEE WRRQEAARFD KEHELWVKER AWIEARDASL  300
MAALKTLRPL TAKTQNEINA NRWTEHEILE RRLQENGYST RQSTWEDIEA KMVNLGYGYE  360
HEANNAECYK KRKEDYLSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ395075	7e-63	GQ395075.1 Gossypium hirsutum cultivar Delta Opal clone MONCS2098 SSR marker DPL0591 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605620.1	0.0	PREDICTED: trihelix transcription factor PTL-like
Swissprot	Q9LZS0	2e-92	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A1U8J788	0.0	A0A1U8J788_GOSHI; trihelix transcription factor PTL-like
STRING	Gorai.009G304600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-74	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]