PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_26259_BGI-A2_v1.0

Common Name

F383_30662

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 669aa MW: 73656.9 Da PI: 8.5447

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_26259_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.1	6.5e-30	93	177	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW++qe+laL+++r++m+ +r++ k+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++k+g+++r++++s +++f+ Cotton_A_26259_BGI-A2_v1.0 93 RWPRQETLALLKIRSDMDGIFRDATVKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKDGRGGRQDGKS--YKFFS 173 8*******************************************************************866665..*** PP trihelix 84 qlea 87 +lea Cotton_A_26259_BGI-A2_v1.0 174 ELEA 177 *985 PP
2	trihelix	108.2	5.4e-34	492	577	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW+k evlaLi++r+ +e+r++++ k+plWee+s m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ Cotton_A_26259_BGI-A2_v1.0 492 RWPKAEVLALINLRSGLETRYQEAGPKGPLWEEISVGMSRMGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFH 573 8*******************************************************************8.99999** PP trihelix 84 qlea 87 ql+a Cotton_A_26259_BGI-A2_v1.0 574 QLDA 577 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.016	90	152	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.597	92	150	IPR017877	Myb-like domain
CDD	cd12203	1.17E-25	92	157	No hit	No description
Pfam	PF13837	8.0E-21	92	178	No hit	No description
SMART	SM00717	0.031	489	551	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.597	491	549	IPR017877	Myb-like domain
Pfam	PF13837	2.9E-23	491	578	No hit	No description
CDD	cd12203	4.27E-28	491	556	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MQQGGGSGGH QSQYGEMGGG PTTDATSSSH MVSEQSEQLE EASPISYRPP AAAIGNPDEL 60 MMRLAEEGDE GDRLGDDHGC VGGGAGGVAS GNRWPRQETL ALLKIRSDMD GIFRDATVKG 120 PLWEDVSRKL AELGYKRSAK KCKEKFENVH KYYKRTKDGR GGRQDGKSYK FFSELEALNT 180 TSATLSKPPI TPATSASLDV APISIGIPMP ISSVRIPPTT TTTTAIPMSS SMLPMPGSAP 240 PPPPATPFGI SFSSNSSSSS QGFEDEDEIW REPSTDMGGT SRKRKRQSSS REGGSSSSRK 300 RMMEFFEGLM KQVMQKQEAL QQTFLESIEK REQDRMIREE AWKRQEMARL AREHELIAQE 360 RAIASSRDAA IISFLQKITG QTIQLPTTVS TIPSVTIPSV PPPPTQPATP VVQPPTPIPT 420 AAPPLHHPPS LPQQKSHLHH QQQQQAQNTQ LLVKHNQQQE PIPSEVIMAI PEQKVPPQEI 480 GGSEGIEPAS SRWPKAEVLA LINLRSGLET RYQEAGPKGP LWEEISVGMS RMGYKRSAKR 540 CKEKWENINK YFKKVKESNK KRPEDAKTCP YFHQLDALYR KKILGSGSSS FSDQNRLEGE 600 TSQQHQDPPM EAPQPSHDQS ENKTGTTIDV LTSKENSPGS LFGKGNGRAT KKSEDIVRKL 660 MEEQEMQMQ

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MQQGGGSGGH QSQYGEMGGG PTTDATSSSH MVSEQSEQLE EASPISYRPP AAAIGNPDEL  60
MMRLAEEGDE GDRLGDDHGC VGGGAGGVAS GNRWPRQETL ALLKIRSDMD GIFRDATVKG  120
PLWEDVSRKL AELGYKRSAK KCKEKFENVH KYYKRTKDGR GGRQDGKSYK FFSELEALNT  180
TSATLSKPPI TPATSASLDV APISIGIPMP ISSVRIPPTT TTTTAIPMSS SMLPMPGSAP  240
PPPPATPFGI SFSSNSSSSS QGFEDEDEIW REPSTDMGGT SRKRKRQSSS REGGSSSSRK  300
RMMEFFEGLM KQVMQKQEAL QQTFLESIEK REQDRMIREE AWKRQEMARL AREHELIAQE  360
RAIASSRDAA IISFLQKITG QTIQLPTTVS TIPSVTIPSV PPPPTQPATP VVQPPTPIPT  420
AAPPLHHPPS LPQQKSHLHH QQQQQAQNTQ LLVKHNQQQE PIPSEVIMAI PEQKVPPQEI  480
GGSEGIEPAS SRWPKAEVLA LINLRSGLET RYQEAGPKGP LWEEISVGMS RMGYKRSAKR  540
CKEKWENINK YFKKVKESNK KRPEDAKTCP YFHQLDALYR KKILGSGSSS FSDQNRLEGE  600
TSQQHQDPPM EAPQPSHDQS ENKTGTTIDV LTSKENSPGS LFGKGNGRAT KKSEDIVRKL  660
MEEQEMQMQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	143	KRSAKKCKE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017615662.1	0.0	PREDICTED: trihelix transcription factor GTL1-like
Swissprot	Q39117	1e-69	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A0B0N0U8	0.0	A0A0B0N0U8_GOSAR; Trihelix transcription factor GTL1-like protein
STRING	Gorai.003G072300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6226	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	2e-49	GT-2-like 1