PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_21204_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 374aa MW: 41601.7 Da PI: 9.9449

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_21204_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.5	1.3e-21	56	147	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessst 78 +W+++e+ aLi+a+r+++ +lrrg+lk+ +W+ev++++ ++++qC++k+e+l+kry+ + +++++ s+ +s+ Cotton_A_21204_BGI-A2_v1.0 56 CWSHDETVALIDAYRDKWYTLRRGNLKASHWQEVADAVtrrcPMATPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFVSS 138 7***********************************64442233489*********************97799 PP trihelix 79 cpyfdqlea 87 +++f++++a Cotton_A_21204_BGI-A2_v1.0 139 WVHFKRMDA 147 *****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.5E-23	55	148	No hit	No description
SMART	SM00595	1.9E-13	64	153	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MSNPSSPSPE QGIPSNTSPP PPSETLLSLP APPTSRSTPS ATATVTPNPR RLPPPCWSHD 60 ETVALIDAYR DKWYTLRRGN LKASHWQEVA DAVTRRCPMA TPPKTAVQCR HKMEKLRKRY 120 RTEIQRARSM PVSRFVSSWV HFKRMDAMEK GPNVKADYNS DSPDDENGDD EEDGQDQEFY 180 DDGYKNGSLN TRSVQKLYRN GIGNNGGSVS GDGNSGGFRI RIPTGVSIAQ PGPRFYGKID 240 HKYGANPNPN PNINANSHPS KGNFGGSGSG SAYGTRILRG FEDLPEKTAA SGKRERERDA 300 VTEMVSAIKV LGDGFVRMEQ MKMEMAREIE TMRMEMEMKR TEVILESQQR IVEAFAKAVS 360 ERKKKPKRMP SPQS

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MSNPSSPSPE QGIPSNTSPP PPSETLLSLP APPTSRSTPS ATATVTPNPR RLPPPCWSHD  60
ETVALIDAYR DKWYTLRRGN LKASHWQEVA DAVTRRCPMA TPPKTAVQCR HKMEKLRKRY  120
RTEIQRARSM PVSRFVSSWV HFKRMDAMEK GPNVKADYNS DSPDDENGDD EEDGQDQEFY  180
DDGYKNGSLN TRSVQKLYRN GIGNNGGSVS GDGNSGGFRI RIPTGVSIAQ PGPRFYGKID  240
HKYGANPNPN PNINANSHPS KGNFGGSGSG SAYGTRILRG FEDLPEKTAA SGKRERERDA  300
VTEMVSAIKV LGDGFVRMEQ MKMEMAREIE TMRMEMEMKR TEVILESQQR IVEAFAKAVS  360
ERKKKPKRMP SPQS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017626273.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A1U8IV58	0.0	A0A1U8IV58_GOSHI; trihelix transcription factor ASIL2-like
STRING	Gorai.004G167100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8963	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-81	Trihelix family protein