PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19228_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 326aa    MW: 36457.2 Da    PI: 7.8991
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19228_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.87.8e-074990641
                    zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                C+ +e+ +++  C+ +   lC  C +++H+       H + p
  Cotton_A_19228_BGI-A2_v1.0 49 CQVCEQAPARVTCKADAAALCVACDQHIHSAnplarqHVRLP 90
                                *****************************6567777776655 PP
2CCT67.53.7e-23271314144
                         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                 Rea++lRYkeKrk+RkFeK+irY+sRK +Ae RpR+KGrF+k++
  Cotton_A_19228_BGI-A2_v1.0 271 REARVLRYKEKRKKRKFEKTIRYASRKSYAEMRPRIKGRFAKRT 314
                                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.267143IPR000315B-box-type zinc finger
SMARTSM003362.6E-4148IPR000315B-box-type zinc finger
CDDcd000210.00128548No hitNo description
PROSITE profilePS5011910.0114491IPR000315B-box-type zinc finger
CDDcd000212.65E-74891No hitNo description
SMARTSM003367.8E-94991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.39271313IPR010402CCT domain
PfamPF062035.2E-17271313IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MASKLCDSCK LGTSDLFCRP HSAFLCCNCD STTHAANHLA SPHPRFCLCQ VCEQAPARVT  60
CKADAAALCV ACDQHIHSAN PLARQHVRLP IIPFYDSDNS VPAVKSNCAV NNFLGEPYFS  120
AVDGDTYVNQ EETEAASWLL PNPNHKAVES PVLYTGQFLF SEIDLYLDLD HVPLNLKIGT  180
PEQTCSGTDA MVPTPSKSVE DPSVNHRCVN SDFTRSKPFA SYGYNPHCHS FTESSSLEVG  240
GVPDGSAMMR EISKQQGRRT ESMRELASAE REARVLRYKE KRKKRKFEKT IRYASRKSYA  300
EMRPRIKGRF AKRTDFEPDR TNIYGF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2018120.0KM201812.1 Gossypium hirsutum cultivar acc. TM-1 CONSTANS-like 4 protein gene, complete cds.
GenBankKM2018140.0KM201814.1 Gossypium hirsutum cultivar ZMS12 CONSTANS-like 4 protein gene, complete cds.
GenBankKM2018160.0KM201816.1 Gossypium hirsutum cultivar SM3 CONSTANS-like 4 protein gene, complete cds.
GenBankKM2018180.0KM201818.1 Gossypium hirsutum cultivar JM CONSTANS-like 4 protein gene, complete cds.
GenBankKM2018220.0KM201822.1 Gossypium hirsutum cultivar Morrilli CONSTANS-like 4 protein gene, complete cds.
GenBankKM2018260.0KM201826.1 Gossypium hirsutum cultivar Richmondii CONSTANS-like 4 protein gene, complete cds.
GenBankKM2018280.0KM201828.1 Gossypium hirsutum var. marie-galante CONSTANS-like 4 protein gene, complete cds.
GenBankKM2018320.0KM201832.1 Gossypium hirsutum f. palmeri CONSTANS-like 4 protein gene, complete cds.
GenBankKM2018400.0KM201840.1 Gossypium barbadense cultivar Giza36 CONSTANS-like 4 protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645134.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-103COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A0D3R3B00.0A0A0D3R3B0_GOSHE; CONSTANS-like 4 protein
STRINGGorai.001G039500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.14e-96CONSTANS-like 4