PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_13185_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 338aa MW: 37655.7 Da PI: 7.9857

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_13185_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.9	4.1e-16	19	107	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 +W+k+e l+Liea++e++ +lr ++lk+ +W +vs+++ + +s++q ++k+e+l++r++++k+++ k+ + ss++ Cotton_A_13185_BGI-A2_v1.0 19 CWSKEESLVLIEAYKEKWFALRCQNLKASDWGAVSAAVssaSGPETMKSSVQYRHKIEKLRQRFRAEKQRSLKNPGKFSSSWD 101 7***********************************7544445689*********************99999*** PP trihelix 81 yfdqle 86 +f l+ Cotton_A_13185_BGI-A2_v1.0 102 LFPLLD 107 *98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.3E-16	18	107	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MATPQSCSAT ATQRVAPPCW SKEESLVLIE AYKEKWFALR CQNLKASDWG AVSAAVSSAS 60 GPETMKSSVQ YRHKIEKLRQ RFRAEKQRSL KNPGKFSSSW DLFPLLDCMN FVPLSVNGSA 120 DQDNLYYNKD GGFYWKLKNH ENIYGNSGSD LGFDHCLSGG QGIDSVGLGK APLKTLGDKS 180 CMNLGFKPKN HGSSNLNYDY DNDLQEYVDE GMGFQAKVSD AWDSVPRGFH QKKCGVVDRS 240 FNPGVDDYRG LNGFASCSSP ELGVKNGNGG VKRGMDPVEE MVSSIKLLAE GFVRMEKMKI 300 EMVKDIEKTR TKMEMKHNEM TLESRQKIMD VFANALLE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017624673.1	0.0	PREDICTED: uncharacterized protein LOC108468295
TrEMBL	A0A1U8KTU6	0.0	A0A1U8KTU6_GOSHI; uncharacterized protein LOC107919134
STRING	EOY24171	1e-150	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-20	Trihelix family protein