PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13010_BGI-A2_v1.0
Common NameF383_15782
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 261aa    MW: 31288 Da    PI: 6.6029
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13010_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.71.7e-24687186
                    trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
                                +W ++e+++Li +r e+e+++ ++k +k+lWe vs++m++rg++r+p qCk+kw+nl +ryk  ++++ ++      ++p+f++l
  Cotton_A_13010_BGI-A2_v1.0  6 QWGQEETRELIFIRGELERDFTAAKHNKTLWEIVSARMKDRGYTRTPDQCKSKWKNLLNRYKGKETSDPEN----GCQFPFFEEL 86
                                7**************************************************************99999985....44689***99 PP

                    trihelix 86 e 86
                                +
  Cotton_A_13010_BGI-A2_v1.0 87 D 87
                                8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.258163IPR017877Myb-like domain
SMARTSM007172.1E-4365IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-5465IPR009057Homeodomain-like
PfamPF138375.3E-22688No hitNo description
SuperFamilySSF466891.39E-5688IPR009057Homeodomain-like
CDDcd122037.09E-22670No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MLGSGQWGQE ETRELIFIRG ELERDFTAAK HNKTLWEIVS ARMKDRGYTR TPDQCKSKWK  60
NLLNRYKGKE TSDPENGCQF PFFEELDAVF TERAKTMQRR LLEPEAGSSS TQAKKKVKRT  120
TTERSSDEFS EGEDEDESEE EKPARGTSHK RKKSDSTVVD KSPRPNSGTR TGLQEMLREF  180
FDQQLRMEMQ WREMMEKRAQ ERQLFEQEWQ QWMEKLERER LMVEKAWRER EEEMRRREES  240
RAERRDSLLT TLLNKLINDN N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A4e-15785786DNA binding protein GT-1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6517840.0EF651784.1 Gossypium hirsutum transcription factor TF2 (TF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624198.10.0PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLA0A0B0PUS40.0A0A0B0PUS4_GOSAR; Trihelix transcription factor GT-3b-like protein
STRINGGorai.004G174900.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17512910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.12e-38Trihelix family protein