PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12729_BGI-A2_v1.0
Common NameF383_30271
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 599aa    MW: 66089.6 Da    PI: 6.798
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12729_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.14.2e-2788169184
                    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                                 rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++k+ + ++++++  t+ + d
  Cotton_A_12729_BGI-A2_v1.0  88 RWPRQETLALLKIRSDMDVTFRDASVKGPLWEEVSRKLAELGYHRSAKKCKEKFENVFKYHKRTKDVRTGKSDGK--TYCFSD 168
                                 8********************************************************************975444..455666 PP

                    trihelix  84 q 84 
                                 q
  Cotton_A_12729_BGI-A2_v1.0 169 Q 169
                                 5 PP
2trihelix101.95.1e-32424509187
                    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                                 rW+k ev+aLie+r++++ ++ ++  k+plWee+s++m++ g++r++k+Ckekwen+nk++kk+k++ kkr +e+s+tcpyf+
  Cotton_A_12729_BGI-A2_v1.0 424 RWPKVEVQALIELRTRLDAKYHDNGPKGPLWEEISAAMKKLGYNRNAKRCKEKWENINKYFKKVKDNHKKR-PEDSKTCPYFH 505
                                 8********************************************************************98.99********* PP

                    trihelix  84 qlea 87 
                                 ql+a
  Cotton_A_12729_BGI-A2_v1.0 506 QLDA 509
                                 **85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.5E-485147IPR001005SANT/Myb domain
PfamPF138372.7E-1787166No hitNo description
CDDcd122034.61E-2587152No hitNo description
PROSITE profilePS500906.95787145IPR017877Myb-like domain
SMARTSM007172.7E-4421483IPR001005SANT/Myb domain
PfamPF138374.6E-22423510No hitNo description
CDDcd122039.92E-27423488No hitNo description
Gene3DG3DSA:1.10.10.601.8E-4423480IPR009057Homeodomain-like
PROSITE profilePS500907.248423481IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MLGGGGDTTA SVLGSGGGGT DGNVTTTAGG GGAVTMGRSS GARDGGSSEG GGVAANNMFG  60
SNGNNNNNSG DEDRVRVDEG DRCFGGNRWP RQETLALLKI RSDMDVTFRD ASVKGPLWEE  120
VSRKLAELGY HRSAKKCKEK FENVFKYHKR TKDVRTGKSD GKTYCFSDQL LALETHPSFQ  180
SPPAMAAVAA PTSPPQAQPQ ATMPAPSLPN VTVPSAAALP SLPQNIVPTN INPTPTLPSF  240
PNVSADQMSN STSSSTSSDL ELEGRRKRKR KWKGFFERLM REVVHEQEEM QKKFLEALEK  300
REQERMAREE AWRMQEMARI NRERELLAQE RSVAAAKDAA LMSLLQKLSE QKNPGQPQSN  360
PPRQPQPTVS VVAAAATPAA VSAALSVPTP QPPPPLVPQQ PMLNLEVASK SDNGDHSCTP  420
SSSRWPKVEV QALIELRTRL DAKYHDNGPK GPLWEEISAA MKKLGYNRNA KRCKEKWENI  480
NKYFKKVKDN HKKRPEDSKT CPYFHQLDAL YREKNKHDSS STQFKPQNSV PLMVRPEQQW  540
PPLPPSDPDH QHRRDPEDLE SYQNHQDEDG NDEDEDEDED EGGEYEIVAS KPVSMGTCE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264269RRKRKR
2264270RRKRKRK
3265270RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9637820.0JX963782.1 Gossypium hirsutum clone NBRI_TRANS-1010 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641953.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-139TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0B0MXN80.0A0A0B0MXN8_GOSAR; Trihelix transcription factor GT-2-like protein
STRINGGorai.009G253700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-157Trihelix family protein