PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_11840_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 413aa MW: 47445.5 Da PI: 4.1823

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_11840_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.5	1.5e-17	179	263	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 Wt++e+l+L++a + + +r++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk+k++ + t +++s+++yf+ Cotton_A_11840_BGI-A2_v1.0 179 WTEHETLVLLDAWGDYFLQCGRKSLRTEEWQEVAEKVSEIsKIERTETQCRNRLDTLKKKYKKEKAMLTE-TGGTTSKWVYFK 260 ***********************************775278**********************9.689999** PP trihelix 84 qle 86 +++ Cotton_A_11840_BGI-A2_v1.0 261 KMD 263 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-21	178	265	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-4	178	244	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.609	179	236	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MDDIEDDARY PPNPYGVSHQ QGYGSSNRQK LPLRNIPSSR PIRNQYVDDD EDGEDEVEDL 60 GEEEETLNRS NGVRYVGKGM DDEDEDEDED EDEDEDDDDD EEEEEEDDLL DDDEEEDDYN 120 EGGDDRKNVV ANLGRHPKKR KLKSLVSSYE FAPRVPTPAV AAPSVLKSSY GGRNSLTDWT 180 EHETLVLLDA WGDYFLQCGR KSLRTEEWQE VAEKVSEISK IERTETQCRN RLDTLKKKYK 240 KEKAMLTETG GTTSKWVYFK KMDMLMSTPP QQGRLSCGFD SGEYVFMNPR VYLNRANGLD 300 EMRDSPANSE FADSEEDVSD GLPPKKRRFG RQSGEDSSVK LLADSIQKFS DIYEKIENSK 360 RQQMLELEKM RMDFHRELEM QKRQIMERAQ AEIAELQHGE NEANDASGEN ASG

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MDDIEDDARY PPNPYGVSHQ QGYGSSNRQK LPLRNIPSSR PIRNQYVDDD EDGEDEVEDL  60
GEEEETLNRS NGVRYVGKGM DDEDEDEDED EDEDEDDDDD EEEEEEDDLL DDDEEEDDYN  120
EGGDDRKNVV ANLGRHPKKR KLKSLVSSYE FAPRVPTPAV AAPSVLKSSY GGRNSLTDWT  180
EHETLVLLDA WGDYFLQCGR KSLRTEEWQE VAEKVSEISK IERTETQCRN RLDTLKKKYK  240
KEKAMLTETG GTTSKWVYFK KMDMLMSTPP QQGRLSCGFD SGEYVFMNPR VYLNRANGLD  300
EMRDSPANSE FADSEEDVSD GLPPKKRRFG RQSGEDSSVK LLADSIQKFS DIYEKIENSK  360
RQQMLELEKM RMDFHRELEM QKRQIMERAQ AEIAELQHGE NEANDASGEN ASG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017648118.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A1U8KBR6	0.0	A0A1U8KBR6_GOSHI; trihelix transcription factor ASIL2-like
STRING	Gorai.011G076900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15605	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	6e-68	Trihelix family protein