PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_08847_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 416aa MW: 47231.8 Da PI: 6.381

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_08847_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.7	2.4e-21	87	181	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr. 71 +Wt ++v++Li++ ++++e+ ++++ +k ++W+ vsk+m erg+ +sp+qC++k++nlnk y+++++ +++ Cotton_A_08847_BGI-A2_v1.0 87 KWTGKMVKLLITILSYIGEDPSTDCagnqikvssllRKLGKWKCVSKVMLERGYIVSPQQCEDKFNNLNKTYRRLNDLLGRGt 169 7********************988899999999999*****************************************95 PP trihelix 72 tsessstcpyfd 83 +++++++ +++d Cotton_A_08847_BGI-A2_v1.0 170 SCKVVENPKLLD 181 588887776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.2E-18	85	209	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MEGKPSAGGN MLQEWEYGCL GLQGSIQPQN EQQPCMSRLP SAFGSVENER QEIIVIEDDV 60 TNYPNQCMLE HNEAGKNEDG SPWQRMKWTG KMVKLLITIL SYIGEDPSTD CAGNQIKVSS 120 LLRKLGKWKC VSKVMLERGY IVSPQQCEDK FNNLNKTYRR LNDLLGRGTS CKVVENPKLL 180 DIINVSEKGK EDVRKLLMSK HLFFEEMCSY HNGNRLYLPH DPDLLQSLLF ILKNVDDYEL 240 LDSNQPVPDK KAGVTAKDNE DFAEFSAKWL ELISENGIAP SGSNQTLNAE GDATEYNGAN 300 SGFSAEISTM WFKPMSNNEV VGPTSSLKPS CFNQIPDTED NEADGSQWMT RRAYQLEKQK 360 LRLKSKVLDL EKQRLKWRCR SWKQDMELEK MRLVNKCLKH GNECIALQLK GKKIGS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MEGKPSAGGN MLQEWEYGCL GLQGSIQPQN EQQPCMSRLP SAFGSVENER QEIIVIEDDV  60
TNYPNQCMLE HNEAGKNEDG SPWQRMKWTG KMVKLLITIL SYIGEDPSTD CAGNQIKVSS  120
LLRKLGKWKC VSKVMLERGY IVSPQQCEDK FNNLNKTYRR LNDLLGRGTS CKVVENPKLL  180
DIINVSEKGK EDVRKLLMSK HLFFEEMCSY HNGNRLYLPH DPDLLQSLLF ILKNVDDYEL  240
LDSNQPVPDK KAGVTAKDNE DFAEFSAKWL ELISENGIAP SGSNQTLNAE GDATEYNGAN  300
SGFSAEISTM WFKPMSNNEV VGPTSSLKPS CFNQIPDTED NEADGSQWMT RRAYQLEKQK  360
LRLKSKVLDL EKQRLKWRCR SWKQDMELEK MRLVNKCLKH GNECIALQLK GKKIGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017613025.1	0.0	PREDICTED: uncharacterized protein LOC108458224
TrEMBL	A0A1U8LB73	0.0	A0A1U8LB73_GOSHI; uncharacterized protein LOC107924621
TrEMBL	A0A2P5X8N5	0.0	A0A2P5X8N5_GOSBA; Uncharacterized protein
STRING	Gorai.012G159500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22149	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	2e-76