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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04914_BGI-A2_v1.0 | ||||||||
Common Name | F383_03813 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 409aa MW: 46014.7 Da PI: 5.688 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 83.1 | 3.5e-26 | 292 | 376 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW++ ev+aLi +r+ +e+++ + +k W+e+s+ m g++rs+k+Ckekwen+nk+++k + kk+ e+s++c+yf+ Cotton_A_04914_BGI-A2_v1.0 292 RWPDAEVQALIMLRSTLEHKFHVTGSKCSIWDEISAGMYNMGYSRSAKKCKEKWENINKYFRKSMGSGKKH-HENSKRCAYFH 373 8******************************************************************9998.78888****** PP trihelix 84 qle 86 +l+ Cotton_A_04914_BGI-A2_v1.0 374 DLD 376 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.957 | 285 | 349 | IPR017877 | Myb-like domain |
CDD | cd12203 | 8.15E-25 | 291 | 355 | No hit | No description |
Pfam | PF13837 | 2.8E-18 | 291 | 377 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MELFTGGREA FPQHVAPFPD LTAIIEPVDD LMMSDDRPTL PPRKLRPIRY NGRSPASSQA 60 EDPSEFAEAV ELVGDEVCAI NGSSFDYMTP PIKAEVGDVT ATVGGGGSGV EGPPSSEQRG 120 EPSGSSSSDS DDDLSATGNE PLKKRKRKSR KKIQLFLEKL VMKVMDKQEQ MHKQLMEMIE 180 KREKERLIRE EAWKRQEMER VKRDEEARAQ EMSRSIALIS FIQNALGHEI EIPISTMSCM 240 EENGVKDASE DHIQKDTVNP FGPTNRWQEG TMQANGAENH EGGVSCDPNN RRWPDAEVQA 300 LIMLRSTLEH KFHVTGSKCS IWDEISAGMY NMGYSRSAKK CKEKWENINK YFRKSMGSGK 360 KHHENSKRCA YFHDLDVLYK NGFGNPVNHI NCIKVDNMDN GESLKGNED |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 147 | KKRKRK |
2 | 142 | 150 | KKRKRKSRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00552 | DAP | Transfer from AT5G47660 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017642902.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1 isoform X1 | ||||
TrEMBL | A0A0B0N518 | 0.0 | A0A0B0N518_GOSAR; Trihelix transcription factor GT-2-like protein | ||||
STRING | Gorai.010G248600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9411 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47660.1 | 2e-42 | Trihelix family protein |