PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03492_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 273aa    MW: 32560.6 Da    PI: 8.6213
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03492_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.71.8e-2434116186
                    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                                 +W+ qe+++ + +r e+++++ ++k++k lWe +s +mre+g++rs++qCk+kw+nl +ryk + + + +    +++++p++d
  Cotton_A_03492_BGI-A2_v1.0  34 QWSVQETKDFLMIRAELDQSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLFTRYKGCGTVDAEI---VRQQFPFYD 113
                                 7********************************************************************97...67789**** PP

                    trihelix  84 qle 86 
                                 +l+
  Cotton_A_03492_BGI-A2_v1.0 114 ELQ 116
                                 *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00183193IPR001005SANT/Myb domain
CDDcd122032.06E-233397No hitNo description
PfamPF138375.0E-2034118No hitNo description
PROSITE profilePS500907.2363591IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEGHHRHHHH QQQQHLQQQQ QPVSVNVEAD RFPQWSVQET KDFLMIRAEL DQSFMETKRN  60
KLLWEVISTR MREKGYNRSA EQCKCKWKNL FTRYKGCGTV DAEIVRQQFP FYDELQAIFT  120
ARMQSVLCSE SEGGGATGSK KKAAQAQLSS DEEDDTEENE YSFRKKKKGK TGGGSSSTSG  180
SINIKEMLAN FMRQQLQMEM QWREALESRE NERRMKEMEW RQTMEALENE RIMMERRWRE  240
REEQRRVREE ARAEKRDALI TALLNKLRRE DQM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614442.10.0PREDICTED: trihelix transcription factor GT-3b-like
SwissprotO804504e-68TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A1U8NHV50.0A0A1U8NHV5_GOSHI; trihelix transcription factor GT-3b-like
STRINGGorai.012G114700.11e-143(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.12e-50Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]