PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01142_BGI-A2_v1.0
Common NameF383_09644
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 335aa    MW: 37035.2 Da    PI: 6.5028
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01142_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.12.1e-09436436
                    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                                + C+ +++  ++lfC+ ++ +lC +C +++H  
  Cotton_A_01142_BGI-A2_v1.0  4 KLCDSCKSATATLFCRADSAFLCSNCDSKIHAA 36
                                68*****************************55 PP
2zf-B_box24.55.6e-084690341
                    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                 ++C+ +e+ +++  C+ +   lC +C   +H+       H++ p
  Cotton_A_01142_BGI-A2_v1.0 46 VWVCEVCEQAPAHVTCKADAAALCITCDRDIHSAnplarrHERLP 90
                                689*****************************6688888898877 PP
3CCT69.49.4e-24272315144
                         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Cotton_A_01142_BGI-A2_v1.0 272 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 315
                                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.2E-14148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.779148IPR000315B-box-type zinc finger
PfamPF006431.2E-6443IPR000315B-box-type zinc finger
CDDcd000211.68E-9548No hitNo description
PROSITE profilePS5011910.7084491IPR000315B-box-type zinc finger
PfamPF006431.7E-64691IPR000315B-box-type zinc finger
CDDcd000213.32E-84791No hitNo description
SMARTSM003361.1E-84991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.658272314IPR010402CCT domain
PfamPF062031.5E-17272314IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCSNCD SKIHAANKLA SRHARVWVCE VCEQAPAHVT  60
CKADAAALCI TCDRDIHSAN PLARRHERLP VTPFYDSVNS VPAVKPNGVV NFLEERYFSD  120
VDGDADVSRE EAEAASWLLP NPNHKAVDSP DVNSGQYVFS EMDPYLDLDY GHGDPKMDAQ  180
EQNSSGTDGV VPVQSKNVQA PSANDHCFDL DFTGSKPFSY GYNPNFISHS VSSSSLDVGV  240
VPDGSTMTDI SNPYGRGPES THQTVQLSPA DREARVLRYR EKRKNRKFEK TIRYASRKAY  300
AEMRPRIKGR FAKRTDIEVE VDRSNMYGFG VVPSF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6958540.0HQ695854.1 Gossypium hirsutum CONSTANS-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631388.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-152COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A0B0PKX10.0A0A0B0PKX1_GOSAR; Zinc finger CONSTANS-LIKE 4-like protein
TrEMBLA0A0D3R2970.0A0A0D3R297_GOSHI; CONSTANS-like 5 protein
TrEMBLA0A0D3R2E30.0A0A0D3R2E3_GOSDA; CONSTANS-like 5 protein
TrEMBLA0A0D3R2R50.0A0A0D3R2R5_GOSHI; CONSTANS-like 5 protein
TrEMBLA0A0D3R2U20.0A0A0D3R2U2_GOSTO; CONSTANS-like 5 protein
TrEMBLA0A0D3R2X20.0A0A0D3R2X2_GOSHE; CONSTANS-like 5 protein
TrEMBLA0A0D3R2X90.0A0A0D3R2X9_GOSHI; CONSTANS-like 5 protein
STRINGGorai.009G065600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-149CONSTANS-like 4