PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00524_BGI-A2_v1.0
Common NameF383_13096
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 513aa    MW: 58519.4 Da    PI: 7.6394
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00524_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.71.7e-29124209187
                    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                                 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +++g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f
  Cotton_A_00524_BGI-A2_v1.0 124 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMcEDHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFF 204
                                 8***********************************99899*****************************98..55667**** PP

                    trihelix  83 dqlea 87 
                                 +qlea
  Cotton_A_00524_BGI-A2_v1.0 205 RQLEA 209
                                 ***85 PP
2trihelix47.26e-15387459283
                    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                                 W++ ev  Li++++ me     g++++ lWeev++km+  gfe+s+ +Ck kwe++  +  k k+++kkr    +++c y++
  Cotton_A_00524_BGI-A2_v1.0 387 WQETEVSRLIQLKTTME-----GCSEEILWEEVAAKMACLGFEKSALMCKTKWESIGAYLMKNKDSNKKR----KENCDYYH 459
                                 ************99987.....678888****************************************97....56899998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.073117182IPR017877Myb-like domain
SMARTSM007170.045121184IPR001005SANT/Myb domain
PfamPF138371.3E-19124210No hitNo description
CDDcd122032.65E-20124189No hitNo description
PROSITE profilePS500906.26379438IPR017877Myb-like domain
SMARTSM0071717383440IPR001005SANT/Myb domain
PfamPF138371.9E-11385460No hitNo description
CDDcd122038.52E-15387445No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MENHHHHHHQ HHQYGMPDLR QLLNGRPSHF QTVQQGSELF SSGDRNLPPL QHHHQFDMMQ  60
MVGRQVVGHE LMPRGGLHHE FSSAAAATPA AAMAAAVNSG STPSASCGFE GEAIAFGGDV  120
GAGRWPRQET LTLLEIRSRL DPKFKEANQK GPLWDEVSRI MCEDHGYQRS GKKCREKFEN  180
LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL YGESSNSVSG HQFTGNSFGF HGTQNCNIGH  240
SQKLCDSLSL SNSFEFEPSS SDDNDLSTEM EINGGSSEKR KKKRSSGSSS KCWKAKIKEF  300
IDLQMRKLMD RQETWLEKLT KTLEEKEKER VLREEQWRKE EAARIEREQK LWAKERARIE  360
ARDSALMEAL QNLTGKQLKD IVKPDDWQET EVSRLIQLKT TMEGCSEEIL WEEVAAKMAC  420
LGFEKSALMC KTKWESIGAY LMKNKDSNKK RKENCDYYHN NNEPLYSDSV SHSNATAGAA  480
GNGVNDSCFR FLMADGENYW ESYGLKLNKG ENQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017622402.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS01e-133PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A0B0PV670.0A0A0B0PV67_GOSAR; Trihelix transcription factor GT-2-like protein
STRINGGorai.002G242000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-109Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]