![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_00322_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 214aa MW: 26044.8 Da PI: 9.7397 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 65.4 | 1.2e-20 | 2 | 73 | 13 | 86 |
trihelix 13 arremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +r e++ ++ ++k++k+lWe +s +++e+g++rs++qCk+kw+nl +ryk ++ e++ +++++++p++++l+ Cotton_A_00322_BGI-A2_v1.0 2 IRAELDPNFMETKRNKQLWEFISTRLKEKGYNRSAEQCKCKWKNLVTRYKGCEMVEEE--DKRQQQFPFYNDLQ 73 78999****************************************************9..567778******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 1.40E-16 | 1 | 54 | No hit | No description |
Pfam | PF13837 | 1.1E-15 | 6 | 75 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MIRAELDPNF METKRNKQLW EFISTRLKEK GYNRSAEQCK CKWKNLVTRY KGCEMVEEED 60 KRQQQFPFYN DLQAIFSARK QTTLKKLCSD KEEDKGRYRG KEKGKKGVSI SGSTSKSIND 120 GNDIKEILKC FMRQQMEMEI QWREALEERE NERRLKEMEW RRTMEALENE RVMMDIRWRE 180 KEEQRRIREE ARSERIDALV TTLLNKLTRD DHKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017622156.1 | 1e-155 | PREDICTED: trihelix transcription factor GT-3b-like | ||||
Swissprot | O80450 | 2e-43 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | A0A1U8PG57 | 1e-151 | A0A1U8PG57_GOSHI; trihelix transcription factor GT-3b-like | ||||
STRING | Gorai.002G262900.1 | 1e-145 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2215 | 28 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38250.1 | 8e-40 | Trihelix family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|