PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_00051_BGI-A2_v1.0

Common Name

F383_18718

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 363aa MW: 39625.2 Da PI: 5.3819

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_00051_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.8	1.5e-28	50	144	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 rWt+qe+l+Li+++r e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e Cotton_A_00051_BGI-A2_v1.0 50 RWTRQEILVLIQGKRVAENRVRRGRaaglafgssQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESNIREE 132 8*******************9866666666669******************************************** PP trihelix 75 ssstcpyfdqle 86 s+s +++ ++l+ Cotton_A_00051_BGI-A2_v1.0 133 SESFWVMRNDLR 144 99*9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.3E-5	50	115	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.4	50	116	IPR017877	Myb-like domain
Pfam	PF13837	3.8E-12	50	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MASEQLSLAA TPDPIDGRKE AVNAAINGVE SRPVSVDCGD DVSKAPRLPR WTRQEILVLI 60 QGKRVAENRV RRGRAAGLAF GSSQVEPKWA SVSSYCKRHG VNRGPVQCRK RWSNLAGDFK 120 KIKEWESNIR EESESFWVMR NDLRRERKLP GFFDKEVYDI LDGAAAVSSA VEIPDSVVAP 180 ALALALTPTP AVQDTAEDNE AVFDSGRSAA AEDGLFSDFE QDDGAGSPEK VELPVSADAG 240 KSVPAPIPIS EQQYQQQPAI PGSKSQGTTK EKHPTSNPEV GSASQEARKR KRTVTNGDEE 300 PDNSPQYHLI DVLEKNGKML VAQLEAQNTN LQQERQQRKD HADSLVAVLN KLADALGRIA 360 DKL

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MASEQLSLAA TPDPIDGRKE AVNAAINGVE SRPVSVDCGD DVSKAPRLPR WTRQEILVLI  60
QGKRVAENRV RRGRAAGLAF GSSQVEPKWA SVSSYCKRHG VNRGPVQCRK RWSNLAGDFK  120
KIKEWESNIR EESESFWVMR NDLRRERKLP GFFDKEVYDI LDGAAAVSSA VEIPDSVVAP  180
ALALALTPTP AVQDTAEDNE AVFDSGRSAA AEDGLFSDFE QDDGAGSPEK VELPVSADAG  240
KSVPAPIPIS EQQYQQQPAI PGSKSQGTTK EKHPTSNPEV GSASQEARKR KRTVTNGDEE  300
PDNSPQYHLI DVLEKNGKML VAQLEAQNTN LQQERQQRKD HADSLVAVLN KLADALGRIA  360
DKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017638976.1	0.0	PREDICTED: trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-119	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A0B0NPR3	0.0	A0A0B0NPR3_GOSAR; Trihelix transcription factor GTL1-like protein
TrEMBL	A0A2P5WHS1	0.0	A0A2P5WHS1_GOSBA; Uncharacterized protein
STRING	Gorai.002G021600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-118	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]