PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00045_BGI-A2_v1.0
Common NameF383_09387
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 470aa    MW: 51565.6 Da    PI: 5.9892
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00045_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.3e-061251437
                    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                                  C+ ++e+ + l+C+ ++  lC  C ++ H+       H
  Cotton_A_00045_BGI-A2_v1.0 12 VPCDFCNEQIAVLYCRADSAKLCLFCDQHVHSAnllsrkH 51
                                57***************************99555565556 PP

2zf-B_box22.72.1e-075496339
                    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                 ++C+++++++++  C +++  lC++C    H +      H++
  Cotton_A_00045_BGI-A2_v1.0 54 SQICDNCSSEPVSVRCSTDNLVLCQECDWDAHGScsvsaaHDR 96
                                689************************9999944777777765 PP

3CCT64.24e-22422465144
                         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                 R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++
  Cotton_A_00045_BGI-A2_v1.0 422 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAT 465
                                 7789**************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-13956IPR000315B-box-type zinc finger
PROSITE profilePS501199.855956IPR000315B-box-type zinc finger
CDDcd000212.10E-71256No hitNo description
PROSITE profilePS501199.1865299IPR000315B-box-type zinc finger
CDDcd000213.56E-65685No hitNo description
SMARTSM003362.25799IPR000315B-box-type zinc finger
PfamPF062031.8E-16422464IPR010402CCT domain
PROSITE profilePS5101714.912422464IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MVSPVSEGKG AVPCDFCNEQ IAVLYCRADS AKLCLFCDQH VHSANLLSRK HVRSQICDNC  60
SSEPVSVRCS TDNLVLCQEC DWDAHGSCSV SAAHDRTLVE GFSGCPSALE LASVWGFDLE  120
EKKTTDRNWN VCHQDMMMPA VESWLYETSL QEMMVPYESF GCYGETLKKQ NTGSGKCKQV  180
IYKQLVELMK RDLMCGGGGE GVGDGGGGGG GEENLASNVE QNGGFLTQQE VLQPLPEPGT  240
ETPTQALFTS LLMMQTQESE RIVNGGNVVL NGNPNNQTSQ IWDFKLGRLR GQEECSQSRL  300
EEEVGYGGDA GFMIKNFNQF MKETSLTDNG NLMGYPPSKH DLASLNNNDS NHPGASQGPS  360
TSESNNLPIP KSSSGSALGK PKGSTGCNDV HFSEQPFLVR PVDHTTPTAT SKADRELLAQ  420
NRGNAMQRYK EKKKTRRYDK HIRYESRKAR ADTRKRVKGR FVKATEAPDD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6183330.0JQ618333.1 Gossypium hirsutum constans-like protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638941.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A0B0PFB50.0A0A0B0PFB5_GOSAR; Zinc finger CONSTANS-LIKE 14-like protein
STRINGGorai.002G022300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.21e-111B-box type zinc finger protein with CCT domain